A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.
☆127Jun 8, 2026Updated 2 months ago
Alternatives and similar repositories for DeepSlice
Users that are interested in DeepSlice are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆60Jun 29, 2026Updated last month
- ☆39Sep 4, 2025Updated 11 months ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆52Aug 4, 2026Updated last week
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆24Jul 4, 2022Updated 4 years ago
- Registration to BrainGlobe atlases in napari using Elastix☆30Aug 4, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ABBA, controlled from python☆21Jul 22, 2026Updated 3 weeks ago
- Automated 3D brain registration with support for multiple species and atlases.☆149Aug 4, 2026Updated last week
- Brainways☆24Aug 28, 2025Updated 11 months ago
- ☆56Aug 30, 2024Updated last year
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆39Nov 24, 2023Updated 2 years ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆27May 22, 2022Updated 4 years ago
- A Python interface to access neuroanatomical atlases☆183Updated this week
- ☆46Jun 18, 2026Updated last month
- A Python package to visualise neuroanatomical data in atlas space☆666Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- SimBA (Simple Behavioral Analysis), a pipeline and GUI for developing supervised behavioral classifiers☆367Updated this week
- A visualization app for 3D-registered data processed in ABBA and QuPath☆21Oct 21, 2022Updated 3 years ago
- ☆18Feb 1, 2024Updated 2 years ago
- Universal Renderer for Neuroscience☆16Nov 4, 2025Updated 9 months ago
- R package for segmentation, registration and generating web-based brain atlases from microscope images☆92Jul 16, 2021Updated 5 years ago
- UNRAVEL: UN-biased high-Resolution Analysis and Validation of Ensembles using Light sheet images☆14Updated this week
- OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁…☆75Updated this week
- Facemap: Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also incl…☆199Jan 26, 2026Updated 6 months ago
- Multi-probe trajectory planning in an intuitive 3D environment☆63Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆82Jul 31, 2026Updated last week
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆168Updated this week
- 3-D imaging visualisation through slicing☆31Jan 14, 2025Updated last year
- A tool for drawing ROIs on videos and analysing deeplabcut videos.☆35Apr 24, 2026Updated 3 months ago
- Automated 3D cell detection in very large images☆230Updated this week
- A Python-based module for creating flexible and robust spike sorting pipelines.☆828Jul 30, 2026Updated 2 weeks ago
- Fast spike sorting with drift correction☆622Apr 27, 2026Updated 3 months ago
- Tools to work with Allen Inst CCF data in matlab☆152Jul 15, 2025Updated last year
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆31Oct 13, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Repository for BehaviorDEPOT pipeline app files and source code☆43Jul 9, 2026Updated last month
- Ephys toolbox to match single units (electrophysiology) either within the same day (over splits) or across two days☆79Aug 4, 2026Updated last week
- PYthon Neural Analysis Package☆376Jul 31, 2026Updated last week
- MultiModal Big Image Data Sharing and Exploration☆20Jan 13, 2023Updated 3 years ago
- ☆41Mar 4, 2024Updated 2 years ago
- A Python toolbox for analysing animal body movements across space and time☆289Aug 5, 2026Updated last week
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆71Apr 22, 2026Updated 3 months ago