CaliAli-PV / CaliAliLinks
Calcium imaging inter-session alignment
☆14Updated last month
Alternatives and similar repositories for CaliAli
Users that are interested in CaliAli are comparing it to the libraries listed below
Sorting:
- ☆52Updated last year
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated last year
- Histology processing☆71Updated 2 months ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆26Updated last year
- Multi-probe trajectory planning in an intuitive 3D environment☆56Updated 3 weeks ago
- Registration of cells across sessions.☆75Updated last year
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆79Updated 7 months ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆55Updated 2 years ago
- Calcium Data Extraction and Analysis☆48Updated 3 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- miniscope analysis pipeline with interactive visualizations☆96Updated last year
- Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)☆40Updated 2 weeks ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆28Updated 3 years ago
- ☆27Updated 2 weeks ago
- Collection of probe description for probeinterface☆17Updated 3 weeks ago
- Configurable acquisition from multiple FLIR/Point Grey camera using Bonsai and Python to h264 compress the video on the GPU.☆15Updated 9 months ago
- spike extraction from calcium signals (Deneux et al., 2016)☆32Updated 5 years ago
- This repository contains code for morphology-free analysis of functional fluorescence microscopy. The focal algorithm, Graph-Filtered Ti…☆15Updated 2 years ago
- Bonsai package for controlling headborne, calcium imaging miniscopes☆12Updated last year
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.☆71Updated this week
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆157Updated 3 weeks ago
- Package for automatic post-processing and merging of multiple spike-sorting analyses.☆28Updated last week
- Tools to work with Allen Inst CCF data in matlab☆143Updated 4 months ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- An open-source ecosystem of hardware and software for head-fixed behavior☆13Updated 2 months ago
- ☆19Updated last year
- SpikeGLX recording system GUI [Neuropixels NI]☆99Updated last week
- NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…☆138Updated 5 months ago
- A gui for browsing joint calcium imaging + behavioral data.☆54Updated 10 months ago