Calcium imaging inter-session alignment
☆17Mar 2, 2026Updated last month
Alternatives and similar repositories for CaliAli
Users that are interested in CaliAli are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This repository contains code for morphology-free analysis of functional fluorescence microscopy. The focal algorithm, Graph-Filtered Ti…☆15Nov 1, 2023Updated 2 years ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆28Dec 21, 2023Updated 2 years ago
- ActSort is an active learning accelerated cell sorter tool for calcium imaging.☆26Apr 6, 2026Updated last week
- ImageJ convenience layer for N5☆19Updated this week
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆159Feb 11, 2026Updated 2 months ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Algorithm for automated source extraction from 1P data☆23Jun 16, 2023Updated 2 years ago
- ☆13Jun 27, 2025Updated 9 months ago
- [beta] An entry-level computational modeling workshop, developed for internal use at Brown University but hopefully useful to many!☆11Dec 16, 2020Updated 5 years ago
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆24Jul 4, 2022Updated 3 years ago
- A package to mimic the use of parfor as done in Matlab.☆21Jan 22, 2026Updated 2 months ago
- Notebooks from the workshop tutorial implementing and discussing a range of generative models commonly used in neuroscience.☆39Mar 8, 2023Updated 3 years ago
- YNAmazon - A program to annotate YNAB transactions with Amazon order info☆14Jun 10, 2025Updated 10 months ago
- pynapple collaborative data analysis (high level python scripts)☆39Dec 4, 2025Updated 4 months ago
- Cell tracking for longitudinal calcium imaging recordings.☆15Dec 11, 2025Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- This reading list is centered around the practical application of linear dynamical systems models to predict neural data☆42Dec 1, 2021Updated 4 years ago
- For managing 2P imaging datasets from preprocessing to activity trace extraction☆10Apr 12, 2019Updated 7 years ago
- code accompanying Pellegrino*, Stein*, & Cayco-Gajic (2023).☆14Oct 7, 2024Updated last year
- Code base for "Arousal as a universal embedding for spatiotemporal brain dynamics"☆22Feb 5, 2026Updated 2 months ago
- Poisson Identifiable VAE (pi-VAE)☆53Jul 7, 2021Updated 4 years ago
- Codes used to simulate the action potential in myelinated axons by Arancibia-Carcamo, Ford, Cossell, Ishida, Tohyama & Attwell (2017, eLi…☆11Aug 10, 2021Updated 4 years ago
- Work towards creating a common JSON based format for compact network specification☆14Jan 6, 2026Updated 3 months ago
- my dissertation!☆11Sep 6, 2022Updated 3 years ago
- A General Model for Learning and Decision-Making in Artificial Animals☆10Jun 18, 2017Updated 8 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆189Jan 26, 2026Updated 2 months ago
- Code for Functional Mixed Models for Fiber Photometry☆17Jul 30, 2025Updated 8 months ago
- code related to Shirvalkar et al. 2023 - Nature Neuroscience☆10May 22, 2023Updated 2 years ago
- Gaussian blur in Fortran and Python. Handles masked input data.☆10Mar 16, 2015Updated 11 years ago
- ☆10Nov 27, 2023Updated 2 years ago
- CNN-ripple is a 1D convolutional neural network (CNN) operating over high-density LFP recordings to detect hippocampal SWR both offline a…☆16Nov 15, 2022Updated 3 years ago
- A very simple and barebones tensor decomposition library for CP decomposition a.k.a. PARAFAC a.k.a. TCA☆38Oct 18, 2023Updated 2 years ago
- ☆13Jan 12, 2024Updated 2 years ago
- Zarr filesystem backend for N5☆19Apr 7, 2026Updated last week
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- a customizable protein feature visualization tool☆19Apr 5, 2023Updated 3 years ago
- Analytical R Tools for Mass Spectrometry☆14Oct 30, 2025Updated 5 months ago
- Fast, volumetric cell detection. In development.☆24Apr 9, 2026Updated last week
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆12Apr 7, 2026Updated last week
- ☆12Mar 27, 2026Updated 3 weeks ago
- Repo for CCN workshop on caiman and mesmerize in January 2023☆12Mar 3, 2023Updated 3 years ago
- Calcium Data Extraction and Analysis☆49Dec 5, 2022Updated 3 years ago