Alternatives and similar repositories for HERBS

Users that are interested in HERBS are comparing it to the libraries listed below

• petersaj / AP_histology
  Histology processing
  ☆72Updated last month
• petersaj / neuropixels_trajectory_explorer
  Neuropixels trajectory explorer with the Allen CCF mouse atlas
  ☆80Updated 9 months ago
• DeNardoLab / BehaviorDEPOT
  Repository for BehaviorDEPOT pipeline app files and source code
  ☆41Updated last month
• VirtualBrainLab / Pinpoint
  Multi-probe trajectory planning in an intuitive 3D environment
  ☆56Updated last month
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆98Updated last year
• zivlab / CellReg
  Registration of cells across sessions.
  ☆76Updated last year
• cortex-lab / allenCCF
  Tools to work with Allen Inst CCF data in matlab
  ☆145Updated 6 months ago
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆62Updated 2 years ago
• m-beau / NeuroPyxels
  NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…
  ☆140Updated 3 weeks ago
• CaliAli-PV / CaliAli
  Calcium imaging inter-session alignment
  ☆15Updated last month
• int-brain-lab / iblapps
  pyqt5 dependent applications for IBL sessions
  ☆32Updated 2 weeks ago
• ryhattori / PatchWarp
  Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.
  ☆26Updated 2 years ago
• djamesbarker / pMAT
  Fiber Photometry Modular Analysis Tool Suite
  ☆42Updated 4 years ago
• wildrootlab / SHARCQ
  Tools to register histological section images and cell count locations to mouse brain atlas
  ☆28Updated 3 years ago
• neuroethology / bentoMAT
  A gui for browsing joint calcium imaging + behavioral data.
  ☆55Updated last year
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆158Updated 3 weeks ago
• Julie-Fabre / awesome_neuropixels
  A curated list of awesome Neuropixels resources.
  ☆124Updated last month
• lahammond / BrainJ
  Fiji pipeline for automated serial section reconstruction and mouse brain analysis.
  ☆31Updated 2 years ago
• BarbourLab / lussac
  Package for automatic post-processing and merging of multiple spike-sorting analyses.
  ☆28Updated last month
• flatironinstitute / neurosift
  Browser-based NWB visualization and DANDI exploration
  ☆62Updated last week
• SpikeInterface / probeinterface_library
  Collection of probe description for probeinterface
  ☆17Updated last week
• billkarsh / CatGT
  SpikeGLX postprocessing [tshift filter CAR fix join extract]
  ☆15Updated 3 weeks ago
• MouseLand / rastermap
  a visualization method for neural data
  ☆241Updated 10 months ago
• EnnyvanBeest / UnitMatch
  Ephys toolbox to match single units (electrophysiology) either within the same day (over splits) or across two days
  ☆73Updated 3 weeks ago
• catalystneuro / neuroconv
  Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.
  ☆71Updated last week
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆57Updated 2 years ago
• MouseLand / facemap
  Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…
  ☆185Updated 2 weeks ago
• Coen-Lab / chronic-neuropixels
  CAD files for the Apollo Implant: a device for Chronic Neuropixels Implantation
  ☆30Updated 2 months ago
• petersenpeter / CellExplorer
  CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…
  ☆111Updated 4 months ago
• JingyiGF / HERBS
  ☆18Updated 2 years ago