Whitlock-Group / HERBS

Related projects ⓘ

Alternatives and complementary repositories for HERBS

• petersaj / AP_histology
  Histology processing
  ☆64Updated 8 months ago
• DeNardoLab / BehaviorDEPOT
  Repository for BehaviorDEPOT pipeline app files and source code
  ☆35Updated last month
• petersaj / neuropixels_trajectory_explorer
  Neuropixels trajectory explorer with the Allen CCF mouse atlas
  ☆69Updated 2 months ago
• neuroethology / bentoMAT
  A gui for browsing joint calcium imaging + behavioral data.
  ☆50Updated 3 months ago
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆61Updated 11 months ago
• VirtualBrainLab / Pinpoint
  Multi-probe trajectory planning in an intuitive 3D environment
  ☆49Updated last month
• int-brain-lab / iblapps
  pyqt5 dependent applications for IBL sessions
  ☆25Updated last week
• simonarvin / braincoordinator
  Open-source stereotaxic coordinator
  ☆14Updated last year
• PeyracheLab / pynacollada
  pynapple collaborative data analysis (high level python scripts)
  ☆37Updated 7 months ago
• JingyiGF / HERBS
  ☆19Updated 9 months ago
• inscopix / inscopix-cnmfe
  Algorithm for automated source extraction from 1P data
  ☆19Updated last year
• schnitzer-lab / EXTRACT-public
  EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…
  ☆65Updated 2 weeks ago
• wildrootlab / SHARCQ
  Tools to register histological section images and cell count locations to mouse brain atlas
  ☆24Updated 2 years ago
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆91Updated 4 months ago
• Julie-Fabre / awesome_neuropixels
  A curated list of awesome Neuropixels resources.
  ☆77Updated this week
• djamesbarker / pMAT
  Fiber Photometry Modular Analysis Tool Suite
  ☆34Updated 3 years ago
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆123Updated 3 weeks ago
• magland / sortingview
  Web app for viewing results of ephys spike sorting
  ☆25Updated 4 months ago
• petersenpeter / CellExplorer
  CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…
  ☆96Updated 3 weeks ago
• nel-lab / FIOLA
  ☆31Updated last year
• lahammond / BrainJ
  Fiji pipeline for automated serial section reconstruction and mouse brain analysis.
  ☆28Updated last year
• MouseLand / pykilosort
  WIP: Python port of Kilosort2
  ☆50Updated last year
• zivlab / CellReg
  Registration of cells across sessions.
  ☆70Updated 3 months ago
• SchwarzNeuroconLab / DeepLabStream
  Closed-loop behavioral experiment toolkit using pose estimation of body parts.
  ☆52Updated last year
• m-beau / NeuroPyxels
  NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…
  ☆113Updated last month
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆45Updated last year
• bermanlabemory / motionmapperpy
  Modified Python 3.0 implementation of MotionMapper (https://github.com/gordonberman/MotionMapper)
  ☆27Updated 5 months ago
• djoshea / neuropixel-utils
  Utilities for managing Neuropixel datasets and Kilosort results
  ☆45Updated last year
• Coen-Lab / chronic-neuropixels
  CAD files for the Apollo Implant: a device for Chronic Neuropixels Implantation
  ☆18Updated last week
• ransona / ROIMatchPub
  Match suite2p ROIs between imaging sessions
  ☆23Updated 5 years ago