Whitlock-Group / HERBSLinks
☆52Updated 11 months ago
Alternatives and similar repositories for HERBS
Users that are interested in HERBS are comparing it to the libraries listed below
Sorting:
- Histology processing☆69Updated last month
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated 10 months ago
- miniscope analysis pipeline with interactive visualizations☆95Updated last year
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆76Updated 4 months ago
- Registration of cells across sessions.☆75Updated last year
- Multi-probe trajectory planning in an intuitive 3D environment☆56Updated last week
- Calcium imaging inter-session alignment☆11Updated 3 weeks ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated last year
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆151Updated 2 weeks ago
- NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…☆128Updated last month
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.☆62Updated this week
- A gui for browsing joint calcium imaging + behavioral data.☆53Updated 7 months ago
- pyqt5 dependent applications for IBL sessions☆28Updated 2 weeks ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆28Updated 3 years ago
- Fiber Photometry Modular Analysis Tool Suite☆40Updated 4 years ago
- Collection of probe description for probeinterface☆16Updated last month
- Tools to work with Allen Inst CCF data in matlab☆139Updated last month
- ☆19Updated last year
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆44Updated 3 weeks ago
- Ephys toolbox to match single units (electrophysiology) either within the same day (over splits) or across two days☆66Updated last month
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆93Updated 9 months ago
- A curated list of awesome Neuropixels resources.☆109Updated 2 weeks ago
- CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…☆105Updated 8 months ago
- Browser-based NWB visualization and DANDI exploration☆59Updated last week
- Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)☆37Updated 2 weeks ago
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆29Updated last year
- Python package to handle probe layout, geometry and wiring to device.☆69Updated 2 weeks ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆26Updated last year
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆174Updated last month