☆55Aug 30, 2024Updated last year
Alternatives and similar repositories for HERBS
Users that are interested in HERBS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- analysis tools for large-scale neural recordings☆17Apr 4, 2025Updated last year
- Brainways☆23Aug 28, 2025Updated 8 months ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆161May 8, 2026Updated 2 weeks ago
- A modular spike sorter written in Python and PyTorch☆28Updated this week
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆123May 6, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Histology processing☆77Apr 24, 2026Updated 3 weeks ago
- PYthon Neural Analysis Package☆367May 15, 2026Updated last week
- Multichannel time series lossless compression in pure Python based on NumPy and zlib☆46Mar 18, 2025Updated last year
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆81Apr 16, 2025Updated last year
- Supervised and unsupervised techniques to decode signals from a population of neurons: the case of head-direction cells.☆11Mar 31, 2020Updated 6 years ago
- ☆18Feb 1, 2024Updated 2 years ago
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆69Apr 22, 2026Updated last month
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆28Dec 21, 2023Updated 2 years ago
- Read and write files from the BrainGlobe neuroanatomy suite☆15May 5, 2026Updated 2 weeks ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Automated quality control, curation and neuron classification of spike-sorted electrophysiology data. Available in MATLAB and in Python.☆234Apr 26, 2026Updated 3 weeks ago
- An active learning platform for expert-guided, data efficient discovery of behavior.☆74Jun 11, 2025Updated 11 months ago
- How to use Aligning Big Brains and Atlases with Python☆14May 3, 2023Updated 3 years ago
- Tools for analyzing spiking data from single-neuron recodings.☆31Feb 20, 2026Updated 3 months ago
- Utilities for managing Neuropixel datasets and Kilosort results☆47May 13, 2025Updated last year
- Code for the image processing and analysis described our Nature Protocols paper.☆10Jun 26, 2015Updated 10 years ago
- A curated list of awesome Neuropixels resources.☆137Dec 16, 2025Updated 5 months ago
- Tools to work with Allen Inst CCF data in matlab☆150Jul 15, 2025Updated 10 months ago
- ☆12Feb 26, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆191Jan 26, 2026Updated 3 months ago
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆31Oct 13, 2023Updated 2 years ago
- Code for Functional Mixed Models for Fiber Photometry☆19Jul 30, 2025Updated 9 months ago
- Resources for burst analysis paper☆14Jun 6, 2018Updated 7 years ago
- ☆38Sep 4, 2025Updated 8 months ago
- Variational Animal Motion Embedding - A tool for time series embedding and clustering☆201Oct 3, 2024Updated last year
- ☆11Feb 27, 2023Updated 3 years ago
- Arduino Uno based signal generator for scientific applications.☆19Sep 24, 2019Updated 6 years ago
- Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF☆116Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- MagellanMapper is a graphical interface for 3D bioimage annotation, atlas registration, and regional quantification☆22Mar 30, 2026Updated last month
- quantification of behavior across chronic social defeat stress☆11Jun 30, 2022Updated 3 years ago
- Precision current source, with optional optical feedback, for driving LEDs and laser diodes☆48Oct 7, 2024Updated last year
- ☆15Updated this week
- miniscope analysis pipeline with interactive visualizations☆98Jul 19, 2024Updated last year
- pynapple collaborative data analysis (high level python scripts)☆39Dec 4, 2025Updated 5 months ago
- The codes, software, models, protocols, and etc. for building and using MINI2P to do the freely-moving recording and analysis. More detai…☆108Oct 27, 2023Updated 2 years ago