adamshch / GraFT-analysisLinks
This repository contains code for morphology-free analysis of functional fluorescence microscopy. The focal algorithm, Graph-Filtered Time-trace (GraFT) Dictionary Learning, is published in Charles et al. 2022 in the IEEE Transactions of Image Processing.
☆15Updated 2 years ago
Alternatives and similar repositories for GraFT-analysis
Users that are interested in GraFT-analysis are comparing it to the libraries listed below
Sorting:
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- Calcium imaging inter-session alignment☆15Updated last week
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.☆71Updated last week
- ☆52Updated last year
- IBL core shared libraries☆65Updated last week
- Mesoscale activity ephys ingest schema☆11Updated 2 years ago
- Histology processing☆71Updated 3 months ago
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- Package for automatic post-processing and merging of multiple spike-sorting analyses.☆28Updated this week
- Browser-based NWB visualization and DANDI exploration☆62Updated 2 weeks ago
- ☆27Updated this week
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆26Updated last year
- UnitRefine is a machine-learning toolbox that simplifies spike sorting curation by reducing manual curation.☆63Updated this week
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated last year
- Region Of Interest Classification and Tracking☆27Updated last week
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆157Updated 3 weeks ago
- Registration of cells across sessions.☆75Updated last year
- Multi-probe trajectory planning in an intuitive 3D environment☆56Updated 3 weeks ago
- Collection of tools to handle Neuropixel 1.0 and 2.0 data☆17Updated this week
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆70Updated 3 months ago
- miniscope analysis pipeline with interactive visualizations☆96Updated last year
- "Approaches to Study Neural Circuits" course☆65Updated 11 months ago
- IaC codebase for the NeuroCAAS Platform☆39Updated last year
- Code for Functional Mixed Models for Fiber Photometry☆13Updated 4 months ago
- Revealing neural correlates of behavior without behavioral measurements☆15Updated 6 years ago
- A open toolbox of several machine learning approaches for sharp-wave ripple detection☆32Updated last year
- ☆24Updated 5 years ago
- Collection of probe description for probeinterface☆17Updated last month
- pyqt5 dependent applications for IBL sessions☆31Updated 2 months ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆79Updated 7 months ago