VervaekeLab / NANSENView external linksLinks
Hennestad et al. 2022
☆23Jan 22, 2026Updated 3 weeks ago
Alternatives and similar repositories for NANSEN
Users that are interested in NANSEN are comparing it to the libraries listed below
Sorting:
- Serial-section automated anatomy extension for ScanImage☆17Jan 28, 2026Updated 2 weeks ago
- General information, resources and dicussions for the BrainGlobe project.☆11Feb 21, 2025Updated 11 months ago
- Build unbiased anatomical templates from individual images☆12Feb 6, 2026Updated last week
- Registration to BrainGlobe atlases in napari using Elastix☆29Updated this week
- NDI (Neuroscience Data Interface) is a cross-platform interface standard for reading neuroscience data and storing the results of analyse…☆14Updated this week
- ☆10Mar 15, 2023Updated 2 years ago
- NIU website on common software problems and their troubleshooting☆10Nov 25, 2025Updated 2 months ago
- Visualise brainreg registration output☆10Nov 20, 2021Updated 4 years ago
- brainglobe.info website☆13Feb 6, 2026Updated last week
- ☆11Oct 21, 2025Updated 3 months ago
- Anatomical space conventions made easy.☆12Feb 3, 2026Updated last week
- A MATLAB toolbox for interacting with the Allen Brain Observatory☆22Aug 20, 2025Updated 5 months ago
- Nextflow pipeline encapsulating workflows for analyzing expansion lattice light-sheet microscopy (ExLLSM) imagery☆14Apr 10, 2025Updated 10 months ago
- Jax implementation of normcorre☆14Jan 25, 2025Updated last year
- Re-usable GitHub Action scripts☆14Feb 4, 2026Updated last week
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Nov 26, 2020Updated 5 years ago
- Optical projection tomography microscope for isotropic whole-brain imaging☆16Jan 27, 2022Updated 4 years ago
- Utility to create a basic Python project structure with tests, CI etc.☆36Feb 5, 2026Updated last week
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆57Sep 15, 2023Updated 2 years ago
- Dimensionality reduction of calcium-imaged neuronal population activity☆17Feb 1, 2023Updated 3 years ago
- How to use Aligning Big Brains and Atlases with Python☆14May 3, 2023Updated 2 years ago
- Fancier logging with python.☆16Feb 2, 2026Updated last week
- ☆19Apr 6, 2022Updated 3 years ago
- Read and write files from the BrainGlobe neuroanatomy suite☆15Feb 3, 2026Updated last week
- Brainways☆22Aug 28, 2025Updated 5 months ago
- Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by Spi…☆15Feb 5, 2026Updated last week
- ☆34May 19, 2025Updated 8 months ago
- Utilities for formatting matplotlib figures☆31Feb 24, 2025Updated 11 months ago
- A Python package to download neuronal morphologies☆18Feb 3, 2026Updated last week
- Fast, volumetric cell detection. In development.☆22Feb 4, 2026Updated last week
- ABBA, controlled from python☆19Nov 24, 2025Updated 2 months ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆25Nov 25, 2025Updated 2 months ago
- For laying organizational groundwork☆18Jul 12, 2020Updated 5 years ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆55May 10, 2024Updated last year
- Lightweight data specification for systems neuroscience, inspired by BIDS.☆20Dec 16, 2025Updated last month
- A draft specification for the nifti-zarr format☆16Dec 5, 2025Updated 2 months ago
- Generate a package-manager-friendly mouse brain atlases collection.☆22Aug 4, 2023Updated 2 years ago
- ☆18Feb 10, 2022Updated 4 years ago
- A package to manage electrophysiology analysis.☆22Feb 3, 2026Updated last week