apasarkar / jnormcorre
Jax implementation of normcorre
☆10Updated 2 months ago
Alternatives and similar repositories for jnormcorre:
Users that are interested in jnormcorre are comparing it to the libraries listed below
- motion correction☆17Updated 2 years ago
- spike extraction from calcium signals (Deneux et al., 2016)☆28Updated 4 years ago
- Compression, denoising and demixing of functional imaging recordings☆28Updated 6 years ago
- ☆34Updated last year
- Calcium Data Extraction and Analysis☆43Updated 2 years ago
- Stream data from PrairieView into MATLAB to allow online processing and analysis☆11Updated last year
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆48Updated last year
- Match suite2p ROIs between imaging sessions☆25Updated 5 years ago
- miniscope analysis pipeline with interactive visualizations☆92Updated 8 months ago
- Region Of Interest Classification and Tracking☆18Updated this week
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year
- Repo for CCN workshop on caiman and mesmerize in January 2023☆13Updated 2 years ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆53Updated 10 months ago
- Deconvolution of calcium imaging data☆92Updated 2 months ago
- IaC codebase for the NeuroCAAS Platform☆37Updated last year
- A package to analyse calcium imaging data recorded with the Miniscope.☆32Updated 2 years ago
- Control and design of two-photon photostimulation experiments☆16Updated last year
- Pytorch implementation of LocaNMF☆35Updated 5 years ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆66Updated 3 weeks ago
- Repository for BehaviorDEPOT pipeline app files and source code☆36Updated 5 months ago
- Histology processing☆65Updated 3 weeks ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆86Updated 4 months ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆137Updated this week
- ☆35Updated 3 years ago
- Serial-section automated anatomy extension for ScanImage☆12Updated last week
- ☆51Updated 7 months ago
- Blazing fast calcium imaging analysis toolbox☆22Updated 7 years ago
- pipeline for volumetric cell segmentation☆12Updated last week
- Single photon tools for Neuroscience☆35Updated last year
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆73Updated 3 months ago