Leveltlab / SpectralSegmentationLinks
Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences
☆13Updated last month
Alternatives and similar repositories for SpectralSegmentation
Users that are interested in SpectralSegmentation are comparing it to the libraries listed below
Sorting:
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆55Updated 2 years ago
- Calcium Data Extraction and Analysis☆48Updated 3 years ago
- Denoising and Demixing Pipeline for in vivo Voltage Imaging Data (SGPMD-NMF)☆15Updated 2 years ago
- motion correction☆17Updated 2 years ago
- ☆41Updated 4 years ago
- ☆34Updated 7 months ago
- HNCcorr algorithm for neuron identification in calcium imaging datasets.☆12Updated 2 years ago
- spike extraction from calcium signals (Deneux et al., 2016)☆33Updated 5 years ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆54Updated last year
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- Serial-section automated anatomy extension for ScanImage☆17Updated last month
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- Flow-Registration toolbox for 2P motion compensation☆27Updated 3 months ago
- Activity Quantification and Analysis for molecular spatiotemporal signals☆32Updated last week
- Matlab routines for online non-rigid motion correction of calcium imaging data☆153Updated 3 years ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆82Updated last year
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆26Updated 2 years ago
- Accurate denoising of voltage imaging data through statistically unbiased prediction, Nature Methods.☆94Updated 4 months ago
- Deconvolution of calcium imaging data☆103Updated 11 months ago
- miniscope analysis pipeline with interactive visualizations☆96Updated last year
- Compression, denoising and demixing of functional imaging recordings☆28Updated 7 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆156Updated last month
- ☆17Updated 2 years ago
- Dimensionality reduction of calcium-imaged neuronal population activity☆17Updated 2 years ago
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆70Updated 3 months ago
- Region Of Interest Classification and Tracking☆27Updated last week
- Voltage imaging analysis in python☆10Updated 4 years ago
- Automated 3D brain registration with support for multiple species and atlases.☆141Updated this week