Leveltlab / SpectralSegmentation
Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences
☆13Updated 2 weeks ago
Alternatives and similar repositories for SpectralSegmentation:
Users that are interested in SpectralSegmentation are comparing it to the libraries listed below
- ☆34Updated last year
- motion correction☆17Updated 2 years ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆49Updated last year
- ☆8Updated 3 years ago
- Flow-Registration toolbox for 2P motion compensation☆23Updated 8 months ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆53Updated 11 months ago
- spike extraction from calcium signals (Deneux et al., 2016)☆29Updated 5 years ago
- Calcium Data Extraction and Analysis☆43Updated 2 years ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆25Updated last year
- Denoising and Demixing Pipeline for in vivo Voltage Imaging Data (SGPMD-NMF)☆14Updated last year
- Accurate denoising of voltage imaging data through statistically unbiased prediction, Nature Methods.☆78Updated last month
- HNCcorr algorithm for neuron identification in calcium imaging datasets.☆12Updated 2 years ago
- ☆17Updated last year
- Activity Quantification and Analysis for molecular spatiotemporal signals☆18Updated this week
- ☆36Updated 3 years ago
- Region Of Interest Classification and Tracking☆18Updated last week
- Match suite2p ROIs between imaging sessions☆25Updated 6 years ago
- Control and design of two-photon photostimulation experiments☆16Updated last year
- Compression, denoising and demixing of functional imaging recordings☆28Updated 6 years ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 4 years ago
- Serial-section automated anatomy extension for ScanImage☆12Updated 3 weeks ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year
- Repo for CCN workshop on caiman and mesmerize in January 2023☆13Updated 2 years ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆25Updated 2 years ago
- Segmentation of anatomical structures in a common coordinate space☆30Updated last week
- Brainways☆16Updated last month
- The ImageJ framework for quantification of neuronal anatomy☆48Updated last week
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆87Updated 5 months ago
- Computational toolbox for analysis of calcium imaging data of neuronal populations☆32Updated last year
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆73Updated 4 months ago