Leveltlab / SpectralSegmentationLinks
Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences
☆13Updated 3 weeks ago
Alternatives and similar repositories for SpectralSegmentation
Users that are interested in SpectralSegmentation are comparing it to the libraries listed below
Sorting:
- motion correction☆17Updated 2 years ago
- Calcium Data Extraction and Analysis☆44Updated 2 years ago
- ☆8Updated 3 years ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆50Updated last year
- ☆34Updated last month
- Denoising and Demixing Pipeline for in vivo Voltage Imaging Data (SGPMD-NMF)☆15Updated 2 years ago
- HNCcorr algorithm for neuron identification in calcium imaging datasets.☆12Updated 2 years ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆53Updated last year
- spike extraction from calcium signals (Deneux et al., 2016)☆31Updated 5 years ago
- Flow-Registration toolbox for 2P motion compensation☆24Updated 11 months ago
- ☆39Updated 3 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year
- Accurate denoising of voltage imaging data through statistically unbiased prediction, Nature Methods.☆83Updated 2 weeks ago
- UCLA Multiphoton Miniature Microscope☆11Updated last month
- Compression, denoising and demixing of functional imaging recordings☆28Updated 7 years ago
- Activity Quantification and Analysis for molecular spatiotemporal signals☆25Updated 3 months ago
- Serial-section automated anatomy extension for ScanImage☆15Updated last week
- ☆17Updated 2 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆90Updated 8 months ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆147Updated last month
- Automated 3D brain registration with support for multiple species and atlases.☆134Updated last week
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆68Updated last month
- Segmentation of anatomical structures in a common coordinate space☆33Updated last week
- Brainways☆18Updated last month
- Matlab routines for online non-rigid motion correction of calcium imaging data☆150Updated 3 years ago
- Match suite2p ROIs between imaging sessions☆26Updated 6 years ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆75Updated 7 months ago
- miniscope analysis pipeline with interactive visualizations☆94Updated 11 months ago
- The ImageJ framework for quantification of neuronal anatomy☆50Updated last week