Leveltlab / SpectralSegmentationLinks
Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences
☆13Updated 2 weeks ago
Alternatives and similar repositories for SpectralSegmentation
Users that are interested in SpectralSegmentation are comparing it to the libraries listed below
Sorting:
- Calcium Data Extraction and Analysis☆45Updated 2 years ago
- Denoising and Demixing Pipeline for in vivo Voltage Imaging Data (SGPMD-NMF)☆15Updated 2 years ago
- motion correction☆17Updated 2 years ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆52Updated 2 years ago
- ☆34Updated 4 months ago
- Compression, denoising and demixing of functional imaging recordings☆28Updated 7 years ago
- ☆17Updated 2 years ago
- HNCcorr algorithm for neuron identification in calcium imaging datasets.☆12Updated 2 years ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆54Updated last year
- Serial-section automated anatomy extension for ScanImage☆15Updated last month
- Flow-Registration toolbox for 2P motion compensation☆25Updated this week
- ☆40Updated 3 years ago
- spike extraction from calcium signals (Deneux et al., 2016)☆32Updated 5 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated last year
- Accurate denoising of voltage imaging data through statistically unbiased prediction, Nature Methods.☆85Updated last month
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- Activity Quantification and Analysis for molecular spatiotemporal signals☆27Updated 3 weeks ago
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆26Updated last year
- Control and design of two-photon photostimulation experiments☆17Updated last year
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆69Updated 2 weeks ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆95Updated 10 months ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆151Updated 3 weeks ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆77Updated 9 months ago
- A curated list of awesome Janelia software☆17Updated 6 months ago
- Segmentation of anatomical structures in a common coordinate space☆33Updated 2 weeks ago
- Region Of Interest Classification and Tracking☆25Updated last week
- Rendering anatomical heatmaps with brainrender and matplotlib☆44Updated 2 weeks ago
- miniscope analysis pipeline with interactive visualizations☆95Updated last year
- Python package for analysis of dynamic fluorescence microscopy data☆101Updated 6 years ago