Leveltlab / SpectralSegmentation
Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences
☆12Updated last week
Related projects ⓘ
Alternatives and complementary repositories for SpectralSegmentation
- Flow-Registration toolbox for 2P motion compensation☆21Updated 3 months ago
- Denoising and Demixing Pipeline for in vivo Voltage Imaging Data (SGPMD-NMF)☆15Updated last year
- ☆31Updated last year
- motion correction☆16Updated last year
- HNCcorr algorithm for neuron identification in calcium imaging datasets.☆12Updated last year
- Accurate denoising of voltage imaging data through statistically unbiased prediction, Nature Methods.☆69Updated 5 months ago
- Calcium Data Extraction and Analysis☆43Updated last year
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆45Updated last year
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆51Updated 6 months ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆51Updated 4 years ago
- ☆33Updated 3 years ago
- A curated list of awesome Janelia software☆14Updated 3 months ago
- Activity Quantification and Analysis for molecular spatiotemporal signals☆14Updated 3 weeks ago
- https://nutil.readthedocs.io/en/latest/☆12Updated 2 months ago
- spike extraction from calcium signals (Deneux et al., 2016)☆28Updated 4 years ago
- ☆17Updated last year
- Serial-section automated anatomy extension for ScanImage☆12Updated 2 months ago
- Segmentation of anatomical structures in a common coordinate space☆28Updated last week
- Compression, denoising and demixing of functional imaging recordings☆28Updated 6 years ago
- Matlab function to import ROIs from ImageJ☆26Updated 4 years ago
- Online documentation and reference for CLIJ☆28Updated 3 years ago
- Brainways☆14Updated last week
- Region Of Interest Classification and Tracking☆14Updated this week
- Config and scripts used to run a Nikon Eclipse Ti in the vanNimwegen lab.☆21Updated 4 months ago
- Image acquisition software for mesoSPIM light-sheet microscopes.☆37Updated this week
- Create movies from series of key-frames in napari.☆38Updated 3 years ago
- Repo for CCN workshop on caiman and mesmerize in January 2023☆12Updated last year
- The ImageJ framework for quantification of neuronal anatomy☆42Updated this week
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆65Updated 2 weeks ago
- Match suite2p ROIs between imaging sessions☆23Updated 5 years ago