Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences
☆12Mar 26, 2026Updated 2 weeks ago
Alternatives and similar repositories for SpectralSegmentation
Users that are interested in SpectralSegmentation are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Parameter-free statistical testing package☆12Dec 6, 2025Updated 4 months ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆27Dec 21, 2023Updated 2 years ago
- Matlab routines for online non-rigid motion correction of calcium imaging data☆157May 29, 2022Updated 3 years ago
- ActSort is an active learning accelerated cell sorter tool for calcium imaging.☆26Mar 26, 2026Updated 2 weeks ago
- HNCcorr algorithm for neuron identification in calcium imaging datasets.☆11Feb 11, 2023Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- spike extraction from calcium signals (Deneux et al., 2016)☆35Apr 9, 2020Updated 6 years ago
- ☆17May 26, 2023Updated 2 years ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆88Mar 11, 2026Updated 3 weeks ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆63Oct 27, 2024Updated last year
- A python file reader for Digital Micrograph's DM4 file format☆26Mar 6, 2026Updated last month
- Denoising and Demixing Pipeline for in vivo Voltage Imaging Data (SGPMD-NMF)☆15Apr 24, 2023Updated 2 years ago
- CQL parser for Java☆15Feb 10, 2026Updated last month
- Calcium Data Extraction and Analysis☆49Dec 5, 2022Updated 3 years ago
- sync2brain's bossdevice RESEARCH Application Programmable Interface (API) for MATLAB☆14Mar 30, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Measurement control and analysis for super-resolution localization fluorescence microscopy☆15Feb 6, 2018Updated 8 years ago
- GUI to compute and explore receptive fields, primarily from calcium imaging recordings☆13Jun 26, 2021Updated 4 years ago
- Fun stuff with the HiWonder TurboPi robot car☆12Feb 4, 2024Updated 2 years ago
- A Matlab interface for reading and writing NWB files☆60Apr 2, 2026Updated last week
- This repository contains the MATLAB code for the technical article "Developing MATLAB Apps Using the Model-View-Controller Pattern."☆15Jan 26, 2026Updated 2 months ago
- A MATLAB toolbox for interacting with the Allen Brain Observatory☆22Mar 30, 2026Updated last week
- Learning High-Quality and General-Purpose Phrase Representations. Findings of EACL 2024☆16Feb 29, 2024Updated 2 years ago
- Real-time image-based autofocus for all wide-field optical microscopy systems☆12Mar 24, 2022Updated 4 years ago
- A framework for conducting realtime neurophysiology and psychophysics experiments☆20Mar 25, 2026Updated 2 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Code implementing a neuromorphic, spiking backpropagation algorithm on Intel's neuromorphic research processor, codenamed Loihi☆16Nov 14, 2024Updated last year
- This is material written for the masterclass Numerical and Analytical Methods for Spatially-Extended Neurobiological Networks, held at th…☆19May 23, 2024Updated last year
- ☆10Feb 20, 2024Updated 2 years ago
- Nonlinear principal component analysis (NLPCA) based on auto-associative neural networks (autoencoder).☆12Jan 17, 2023Updated 3 years ago
- A very simple and barebones tensor decomposition library for CP decomposition a.k.a. PARAFAC a.k.a. TCA☆38Oct 18, 2023Updated 2 years ago
- JS 2D colormap to color encode scatterplots☆14Oct 13, 2017Updated 8 years ago
- ☆10Aug 17, 2021Updated 4 years ago
- A spike raster plot from spike time stamps with optional trial and group data.☆12Nov 15, 2024Updated last year
- ☆18Mar 24, 2026Updated 2 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆188Jan 26, 2026Updated 2 months ago
- [ICLR 2026] Official implementation of PBFM - Physics-Based Flow Matching☆46Feb 9, 2026Updated 2 months ago
- Flow-Registration toolbox for 2P motion compensation☆27Sep 16, 2025Updated 6 months ago
- ERICA: Emulated Retinal Image CApture☆12Nov 4, 2022Updated 3 years ago
- Learn morphological states of dynamic cells☆13Apr 16, 2023Updated 2 years ago
- Advanced Tool for Labeling And Segmentation☆40Oct 21, 2024Updated last year
- Class notes, quizzes, and exams from a one-semester Introduction to Programming in C class I taught at U Penn☆16Mar 20, 2016Updated 10 years ago