aertslab / pycistargetLinks
pycistarget is a python module to perform motif enrichment analysis in sets of regions with different tools and identify high confidence TF cistromes.
☆18Updated 11 months ago
Alternatives and similar repositories for pycistarget
Users that are interested in pycistarget are comparing it to the libraries listed below
Sorting:
- Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.☆111Updated 2 months ago
- Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcri…☆70Updated last month
- ☆37Updated last year
- Single Cell Analysis of Five'Ends☆50Updated last year
- ☆48Updated this week
- A repository of pipelines for single-cell data in Nextflow DSL2☆80Updated 2 years ago
- Genomic coordinates of problematic genomic regions as GRanges☆50Updated last month
- Architectural stripe detection from 3D genome conformation data☆18Updated 4 months ago
- snakemake pipeline for Hi-C post-processing☆22Updated last year
- Genome-wide contact analysis using sklearn☆72Updated last year
- Tools to analyze Dip-C (or other 3C/Hi-C) data☆74Updated last year
- Notes on single-cell Hi-C technologies, tools, and data☆86Updated last year
- Clustering motif models to remove redundancy☆43Updated 2 years ago
- Fast visualization tool for large-scale and high dimensional single-cell data☆77Updated last month
- ☆82Updated 2 years ago
- Efficient genotyping bi-allelic SNPs on single cells☆155Updated 2 months ago
- Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation☆79Updated 11 months ago
- Lightweight converter between hic and cool contact matrices.☆74Updated last year
- Scripts for using scanpy☆38Updated 2 months ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆74Updated 2 years ago
- Links to ATAC-seq analysis tools☆76Updated 4 years ago
- mgatk: mitochondrial genome analysis toolkit☆109Updated 11 months ago
- Tools for single-cell data processing☆131Updated last year
- Create cisTarget databases☆55Updated 7 months ago
- epigenome analysis to rank transcription factors☆31Updated 2 years ago
- Single-cell copy number calling and event history reconstruction.☆28Updated last year
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.