b2jia / jieLinks
A spatial genome aligner for analyzing multiplexed DNA-FISH imaging data.
☆18Updated last year
Alternatives and similar repositories for jie
Users that are interested in jie are comparing it to the libraries listed below
Sorting:
- Toolkit for single-cell DNA methylation analysis.☆42Updated 3 weeks ago
- Comparison of Hi-C Experiments using Structural Similarity.☆28Updated last year
- Feature-rich Python implementation of the tximport package for gene count estimation.☆36Updated last month
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆15Updated 2 weeks ago
- Architectural stripe detection from 3D genome conformation data☆18Updated last year
- Blazing fast toolkit to work with .hic and .cool files☆31Updated 2 weeks ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆19Updated last year
- snakemake pipeline for Hi-C post-processing☆22Updated last year
- ☆44Updated 2 weeks ago
- HiC for copy Number variation and Translocation detection☆39Updated 3 years ago
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆32Updated 3 months ago
- GREAT algorithm in Python☆14Updated 2 years ago
- Single-cell Hi-C data analysis toolbox☆27Updated 3 years ago
- Molecular interactions inference from single-cell multi-omics data☆27Updated last month
- a computational tool for analyzing single cell Hi-C data☆25Updated last year
- Genome-wide contact analysis using sklearn☆68Updated last year
- pycistarget is a python module to perform motif enrichment analysis in sets of regions with different tools and identify high confidence …☆17Updated 5 months ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆29Updated 7 months ago
- A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction☆90Updated this week
- ☆67Updated last month
- Transcription Factor Enrichment Analysis☆34Updated last week
- Single-cell Graph Cuts Optimization☆16Updated last year
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆38Updated last year
- Pipeline for designing custom probes against human genes☆17Updated 8 months ago
- ☆16Updated last year
- Annotation and segmentation of MAS-seq data☆20Updated 2 years ago
- Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation☆74Updated 5 months ago
- TF analysis from epigenetic and Hi-C data☆17Updated 3 months ago
- splicing and feature maps for RBPs☆25Updated 3 years ago
- Splits fastq files evenly☆21Updated 4 years ago