b2jia / jie
A spatial genome aligner for analyzing multiplexed DNA-FISH imaging data.
☆18Updated last year
Alternatives and similar repositories for jie:
Users that are interested in jie are comparing it to the libraries listed below
- Toolkit for single-cell DNA methylation analysis.☆40Updated this week
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆18Updated last year
- TF analysis from epigenetic and Hi-C data☆17Updated last month
- snakemake pipeline for Hi-C post-processing☆22Updated 7 months ago
- Blazing fast toolkit to work with .hic and .cool files☆28Updated last week
- Information-based dimensionality reduction☆29Updated last month
- Pipeline for designing custom probes against human genes☆14Updated 2 months ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆28Updated 2 months ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆32Updated 2 months ago
- Architectural stripe detection from 3D genome conformation data☆17Updated last year
- A python package for chromVAR☆27Updated last year
- Single-cell Hi-C data analysis toolbox☆24Updated 3 years ago
- ☆39Updated this week
- scOpen: single-cell open chromatin analysis via NMF modelling☆25Updated last year
- ☆17Updated 10 months ago
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆14Updated last week
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆36Updated last year
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment☆20Updated 9 months ago
- ☆42Updated 3 months ago
- Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper☆24Updated 2 years ago
- ☆23Updated this week
- ☆34Updated 8 months ago
- Cooler demo using a Jupyter notebook Binder☆16Updated 4 years ago
- Single-cell Graph Cuts Optimization☆16Updated 9 months ago
- HiC for copy Number variation and Translocation detection☆37Updated 3 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆26Updated last year
- Scripts + resources for analyzing combinatorial Hi-C data☆27Updated 5 years ago
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆31Updated 2 years ago
- Pipeline for Universal Mapping of ATAC-seq☆24Updated 9 months ago