A spatial genome aligner for analyzing multiplexed DNA-FISH imaging data.
☆18Oct 10, 2023Updated 2 years ago
Alternatives and similar repositories for jie
Users that are interested in jie are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PHi-C: deciphering Hi-C data into polymer dynamics☆11Aug 12, 2020Updated 6 years ago
- MERFISH decoding software☆29Aug 16, 2025Updated 11 months ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated last year
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆22Sep 12, 2023Updated 2 years ago
- Toolkit for single-cell DNA methylation analysis.☆50May 25, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Case-control matching for microbiome data☆10Aug 8, 2023Updated 3 years ago
- ☆73Nov 21, 2025Updated 8 months ago
- ☆16Apr 10, 2023Updated 3 years ago
- repository of notebooks for cryoEM☆14Mar 12, 2020Updated 6 years ago
- ☆39Sep 5, 2024Updated last year
- Mapping pipeline for snmC-seq based technologies.☆20Sep 25, 2023Updated 2 years ago
- HiCDCPlus☆19Jun 6, 2022Updated 4 years ago
- ☆18Mar 31, 2026Updated 4 months ago
- Extract data quickly from Juicebox via straw☆70Apr 6, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Tutorials for Squidpy☆35Jul 10, 2026Updated last month
- R API and htmlwidget for Vitessce☆45Aug 13, 2025Updated last year
- viralFlye pipeline☆18Aug 12, 2024Updated 2 years ago
- ☆12Nov 9, 2020Updated 5 years ago
- Bayesian Inferential Regression for Differential Microbiome Analysis☆26Jun 5, 2026Updated 2 months ago
- Spacewalk is an application for displaying and interacting with super-resolution chromatin tracing data in 3D. SpaceWalk includes igv.js …☆12Nov 8, 2025Updated 9 months ago
- Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.☆39Apr 20, 2026Updated 3 months ago
- Comparison of Hi-C Experiments using Structural Similarity.☆27Jul 18, 2023Updated 3 years ago
- Server component for HiGlass that manages and serves tiled data☆21May 23, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- a tool for annotation of immunoglobulin genes in genome assemblies☆15Sep 22, 2025Updated 10 months ago
- Multiresolution Tensor Learning☆10Aug 18, 2020Updated 5 years ago
- An R package to visualize high-throughput sequencing data.☆12Nov 18, 2019Updated 6 years ago
- Repository for codes, analyses and visualizations for the CAMI II challenges☆15Sep 4, 2023Updated 2 years ago
- Computational pipeline to process EasySci-RNA data.☆23Jan 17, 2024Updated 2 years ago
- A toolkit for analyzing architectural stripes☆23Dec 1, 2024Updated last year
- A graph-inspired data structure for determining likely chains of sequences from breadcrumbs of evidence☆17Jun 29, 2021Updated 5 years ago
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆42Jul 6, 2023Updated 3 years ago
- A deep-learning framework for predicting a full range of structural variations from bulk and single-cell contact maps☆63Aug 28, 2025Updated 11 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆89Nov 16, 2025Updated 8 months ago
- Morandi color palette for R plot☆11Nov 20, 2020Updated 5 years ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆87Mar 22, 2026Updated 4 months ago
- Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper☆27Nov 21, 2022Updated 3 years ago
- Reference-guided multiple sequence alignment of viral genomes☆73May 30, 2026Updated 2 months ago
- sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale☆103Mar 1, 2025Updated last year
- Find and decompose genomic variation sites in pangenome graphs☆16Jul 25, 2026Updated 2 weeks ago