b2jia / jieLinks
A spatial genome aligner for analyzing multiplexed DNA-FISH imaging data.
☆18Updated last year
Alternatives and similar repositories for jie
Users that are interested in jie are comparing it to the libraries listed below
Sorting:
- Toolkit for single-cell DNA methylation analysis.☆42Updated this week
- snakemake pipeline for Hi-C post-processing☆22Updated last year
- Comparison of Hi-C Experiments using Structural Similarity.☆27Updated 2 years ago
- Architectural stripe detection from 3D genome conformation data☆18Updated last week
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆38Updated last year
- Feature-rich Python implementation of the tximport package for gene count estimation.☆37Updated last week
- DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data☆33Updated 5 months ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆19Updated 2 years ago
- ☆44Updated last month
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆15Updated last week
- Single-cell Hi-C data analysis toolbox☆27Updated 4 years ago
- ☆38Updated this week
- Genome-wide contact analysis using sklearn☆68Updated last year
- Builds a PEP from SRA or GEO accessions☆53Updated 2 months ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆72Updated last year
- A python package for chromVAR☆30Updated 2 years ago
- Molecular interactions inference from single-cell multi-omics data☆27Updated 3 weeks ago
- ☆17Updated last year
- HiC for copy Number variation and Translocation detection☆39Updated 4 years ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆29Updated 2 weeks ago
- ☆16Updated 3 years ago
- splicing and feature maps for RBPs☆25Updated 3 years ago
- Python bindings to UCSC BigWig and BigBed library☆35Updated 5 months ago
- Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation☆76Updated 8 months ago
- Python reimplementation of hicrep with compatibility for sparse matrices☆18Updated 2 years ago
- ☆68Updated 3 months ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆67Updated 2 years ago
- Blazing fast toolkit to work with .hic and .cool files☆38Updated this week
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆41Updated 2 years ago
- Pipeline for designing custom probes against human genes☆18Updated 10 months ago