b2jia / jie
A spatial genome aligner for analyzing multiplexed DNA-FISH imaging data.
☆18Updated last year
Related projects ⓘ
Alternatives and complementary repositories for jie
- Toolkit for single-cell DNA methylation analysis.☆40Updated 3 weeks ago
- snakemake pipeline for Hi-C post-processing☆22Updated 4 months ago
- Python implementation of HiCRep stratum-adjusted correlation coefficient of Hi-C data with Cooler sparse contact matrix support☆36Updated 9 months ago
- Comparison of Hi-C Experiments using Structural Similarity.☆26Updated last year
- dcHiC: Differential compartment analysis for Hi-C datasets☆62Updated 10 months ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆17Updated last year
- Blazing fast toolkit to work with .hic and .cool files☆24Updated last week
- Architectural stripe detection from 3D genome conformation data☆17Updated last year
- ☆39Updated this week
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆28Updated this week
- A python package for chromVAR☆27Updated last year
- ☆17Updated 8 months ago
- Single-cell Hi-C data analysis toolbox☆24Updated 3 years ago
- The Isoforms from Single-Cell; Long-read Expression Suite☆19Updated 2 months ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆29Updated 2 years ago
- .h5mu files interface for Seurat☆26Updated 11 months ago
- Information-based dimensionality reduction☆29Updated 3 months ago
- Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy☆23Updated last year
- Benchmarking long-read RNA-seq analysis tools☆25Updated 9 months ago
- ☆24Updated 5 months ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆25Updated last year
- Genome-wide contact analysis using sklearn☆59Updated 8 months ago
- ☆34Updated 6 months ago
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆13Updated last week
- TF analysis from epigenetic and Hi-C data☆17Updated 2 weeks ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆26Updated last month
- Cooler demo using a Jupyter notebook Binder☆15Updated 4 years ago
- Reusable tools for working with next-generation sequencing (NGS) data☆11Updated last month
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment☆18Updated 7 months ago
- Mapping pipeline for snmC-seq based technologies.☆16Updated last year