Alternatives and similar repositories for FLeCS

Users that are interested in FLeCS are comparing it to the libraries listed below

• Genentech / sVAE
  ☆66Updated 2 years ago
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆73Updated 2 years ago
• PayamDiba / SERGIO
  A simulator for single-cell expression data guided by gene regulatory networks
  ☆73Updated last year
• nitzanlab / biolord
  ☆90Updated last year
• vandijklab / CINEMA-OT
  ☆36Updated 9 months ago
• wukevin / babel
  Deep learning model for single-cell inference of multi-omic profiles from a single input modality.
  ☆46Updated 2 years ago
• pinellolab / EPInformer
  code to run EPInformer for gene expression prediction and gene-enhancer link prediction
  ☆44Updated 2 weeks ago
• KrishnaswamyLab / MELD
  Quantifying experimental perturbations at single cell resolution
  ☆112Updated last year
• scverse / scvi-tools-skeleton
  Template repository for creating novel models with scvi-tools
  ☆20Updated 3 years ago
• theislab / sc-pert
  Models and datasets for perturbational single-cell omics
  ☆171Updated 3 years ago
• theislab / trVAE
  Conditional out-of-distribution prediction
  ☆62Updated last year
• shmohammadi86 / ACTIONet
  ACTIONet single-cell analysis framework
  ☆44Updated last year
• calico / scnym
  Semi-supervised adversarial neural networks for classification of single cell transcriptomics data
  ☆77Updated 2 weeks ago
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆52Updated 4 years ago
• zcang / SpaOTsc
  ☆47Updated 6 months ago
• jkobject / scPRINT
  single cell foundation model for Gene network inference and more
  ☆19Updated 2 months ago
• HantaoShu / DeepSEM
  ☆90Updated 2 years ago
• jkobject / scDataLoader
  a dataloader to work with large single cell datasets from lamindb
  ☆34Updated this week
• yutongo / TIGON
  ☆52Updated 10 months ago
• theislab / scgen-reproducibility
  ☆33Updated 5 years ago
• pinellolab / simba
  SIMBA: SIngle-cell eMBedding Along with features
  ☆66Updated last year
• MarioniLab / sagenet
  Spatial reconstruction of dissociated single-cell data
  ☆19Updated 2 years ago
• gifford-lab / prescient
  Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.
  ☆52Updated last year
• mossjacob / pyslingshot
  Python implementation of the Slingshot pseudotime algorithm
  ☆69Updated 3 months ago
• theislab / multicpa
  ☆15Updated 3 years ago
• theislab / cpa
  The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…
  ☆134Updated last year
• rs239 / velorama
  Gene regulatory network inference for RNA velocity and pseudotime data
  ☆28Updated 3 months ago
• altoslabs / perturbench
  ☆74Updated last week
• theislab / DRVI
  Unsupervised Deep Disentangled Representation of Single-Cell Omics
  ☆59Updated this week
• theislab / scib-reproducibility
  Additional code and analysis from the single-cell integration benchmarking project
  ☆71Updated 3 years ago