Functional and Learnable Cell dynamicS
☆21May 13, 2025Updated last year
Alternatives and similar repositories for FLeCS
Users that are interested in FLeCS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Nextflow implementation of scAutoQC pipeline☆12Jul 9, 2026Updated last week
- ☆10Apr 28, 2023Updated 3 years ago
- Multiscale earth mover's distance methods for tree and manifold structured data☆13Mar 8, 2025Updated last year
- Reading Group @mila-iqia on Computational Optimal Transport for Machine Learning Applications☆13Jun 3, 2022Updated 4 years ago
- ☆16Sep 1, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- R and MATLAB scripts for MAGICAL☆12Jun 26, 2024Updated 2 years ago
- ☆39Apr 16, 2025Updated last year
- Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data☆11Jul 6, 2026Updated 2 weeks ago
- ☆27May 22, 2025Updated last year
- Causal discovery of gene regulatory programs from single-cell genomics☆20Sep 5, 2025Updated 10 months ago
- This repository contains all code used for the Human Lung Cell Atlas project.☆60Aug 21, 2023Updated 2 years ago
- A deep learning architecture for robust inference and accurate prediction of cellular dynamics☆87Jul 20, 2025Updated last year
- ☆17Nov 13, 2021Updated 4 years ago
- Universal Single-Cell Genomics Preprocessing package☆50Updated this week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- cell type specific, trait-associated gene regulation☆30Mar 31, 2025Updated last year
- A collection of color palettes inspired by plants and pop culture.☆21Sep 3, 2025Updated 10 months ago
- DynGFN: Bayesian Dynamic Causal Discovery using Generative Flow Networks☆61Sep 17, 2025Updated 10 months ago
- scDoRI (single-cell Deep multi-Omic Regulatory Inference) is a deep learning model to infer enhancer-mediated gene regulatory networks (e…☆33Aug 20, 2025Updated 11 months ago
- Functional Inference of Gene Regulation☆54Jul 5, 2024Updated 2 years ago
- Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)☆26Jun 12, 2026Updated last month
- Protein structure datasets for machine learning.☆115Apr 22, 2025Updated last year
- Adata Viewer: Head/Less/Shape h5ad file in terminal☆12Mar 19, 2025Updated last year
- ☆59Mar 23, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- pseudobulking on an AnnData object☆37Jun 17, 2026Updated last month
- PyIOmica (pyiomica) is a Python package for omics analyses.☆16Oct 6, 2025Updated 9 months ago
- Global Waddington-OT☆23Mar 25, 2025Updated last year
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆14Apr 5, 2025Updated last year
- A GWAS course☆12Nov 4, 2021Updated 4 years ago
- Code release for "Stochastic Optimal Control Matching"☆43Aug 14, 2024Updated last year
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆28Jan 3, 2025Updated last year
- Conveniently process a dictionary of anndatas☆24Apr 17, 2026Updated 3 months ago
- Code corresponding to the paper Diffusion Earth Mover's Distance and Distribution Embeddings☆38Nov 29, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- VAE package for reproducible generative models of biological data☆13Nov 28, 2024Updated last year
- 🏆 A ranked list of awesome machine learning Python libraries. Updated weekly.☆12Jan 17, 2021Updated 5 years ago
- Weakly supervised learning uncovers phenotypic signatures in single-cell data☆41Jun 7, 2026Updated last month
- Code for the meQTL analyses presented in Hawe et al. 2021 Nature Genetics☆14Jan 14, 2022Updated 4 years ago
- Network analyses of single cell-based digital twins for personalized treatment of inflammatory disease☆16Mar 23, 2024Updated 2 years ago
- A simulator for single-cell expression data guided by gene regulatory networks☆82May 8, 2024Updated 2 years ago
- A flexible and fast sgRNA counter from FASTQ Files☆11Jun 17, 2026Updated last month