Bertinus / FLeCSLinks
Functional and Learnable Cell dynamicS
☆21Updated 8 months ago
Alternatives and similar repositories for FLeCS
Users that are interested in FLeCS are comparing it to the libraries listed below
Sorting:
- ☆64Updated 2 years ago
- code to run EPInformer for gene expression prediction and gene-enhancer link prediction☆44Updated 3 months ago
- A simulator for single-cell expression data guided by gene regulatory networks☆73Updated last year
- Models and datasets for perturbational single-cell omics☆172Updated 3 years ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆53Updated 4 years ago
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics data☆77Updated last year
- Conditional out-of-distribution prediction☆62Updated last year
- ☆89Updated last year
- SIMBA: SIngle-cell eMBedding Along with features☆66Updated last year
- spatial transcriptome, single cell☆73Updated 2 years ago
- ☆69Updated 6 months ago
- ☆70Updated last week
- Deep learning model for single-cell inference of multi-omic profiles from a single input modality.☆46Updated 2 years ago
- ACTIONet single-cell analysis framework☆44Updated last year
- Diffusion model for gene regulatory network inference.☆24Updated 5 months ago
- ☆25Updated last year
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆58Updated this week
- Quantifying experimental perturbations at single cell resolution☆112Updated last year
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆131Updated last year
- CellBox: Interpretable Machine Learning for Perturbation Biology☆56Updated 2 years ago
- ☆38Updated last month
- Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.☆22Updated 4 months ago
- ☆62Updated last year
- ☆34Updated 9 months ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆59Updated 3 weeks ago
- a dataloader to work with large single cell datasets from lamindb☆33Updated last month
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆51Updated 11 months ago
- scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.☆54Updated 2 months ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆90Updated 2 months ago
- scDoRI (single-cell Deep multi-Omic Regulatory Inference) is a deep learning model to infer enhancer-mediated gene regulatory networks (e…☆29Updated 4 months ago