Alternatives and similar repositories for FLeCS

Users that are interested in FLeCS are comparing it to the libraries listed below

• Genentech / sVAE
  ☆63Updated 2 years ago
• altoslabs / perturbench
  ☆34Updated 2 months ago
• const-ae / linear_perturbation_prediction-Paper
  ☆23Updated 3 weeks ago
• PayamDiba / SERGIO
  A simulator for single-cell expression data guided by gene regulatory networks
  ☆63Updated last year
• nitzanlab / biolord
  ☆80Updated 11 months ago
• theislab / cpa
  The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…
  ☆107Updated 11 months ago
• hui2000ji / scETM
  A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.
  ☆50Updated 3 years ago
• vandijklab / CINEMA-OT
  ☆32Updated 3 months ago
• welch-lab / PerturbNet
  PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation
  ☆40Updated 3 weeks ago
• calico / scnym
  Semi-supervised adversarial neural networks for classification of single cell transcriptomics data
  ☆75Updated 7 months ago
• theislab / trVAE
  Conditional out-of-distribution prediction
  ☆63Updated last year
• KrishnaswamyLab / MELD
  Quantifying experimental perturbations at single cell resolution
  ☆109Updated 10 months ago
• ma-compbio / SpiceMix
  spatial transcriptome, single cell
  ☆68Updated 2 years ago
• scverse / scvi-tools-skeleton
  Template repository for creating novel models with scvi-tools
  ☆20Updated 2 years ago
• pinellolab / simba
  SIMBA: SIngle-cell eMBedding Along with features
  ☆63Updated 9 months ago
• theislab / CellFlow
  Modeling complex perturbations with CellFlow
  ☆74Updated last week
• zcang / SpaOTsc
  ☆45Updated 2 weeks ago
• sanderlab / CellBox
  CellBox: Interpretable Machine Learning for Perturbation Biology
  ☆55Updated 2 years ago
• TuftsBCB / RegDiffusion
  Diffusion model for gene regulatory network inference.
  ☆22Updated 2 weeks ago
• theislab / sc-pert
  Models and datasets for perturbational single-cell omics
  ☆155Updated 2 years ago
• theislab / prophet
  ☆35Updated 3 months ago
• MarioniLab / sagenet
  Spatial reconstruction of dissociated single-cell data
  ☆19Updated last year
• saezlab / omnipath
  Python client for the OmniPath web service
  ☆45Updated last month
• pinellolab / EPInformer
  code to run EPInformer for gene expression prediction and gene-enhancer links prioritization
  ☆44Updated 8 months ago
• klarman-cell-observatory / scPhere
  ☆100Updated 2 years ago
• wukevin / babel
  Deep learning model for single-cell inference of multi-omic profiles from a single input modality.
  ☆43Updated 2 years ago
• decomverse / ACTIONet
  ACTIONet single-cell analysis framework
  ☆42Updated 10 months ago
• HantaoShu / DeepSEM
  ☆83Updated 2 years ago
• aristoteleo / Scribe-py
  Regulatory networks with Direct Information in python
  ☆40Updated 2 years ago
• theislab / scTab
  ☆59Updated 10 months ago