henssenlab / TreeShapedRearrangements
Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)
☆14Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for TreeShapedRearrangements
- Scripts used for the ACT paper☆12Updated 3 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆19Updated last month
- Analysis pipeline for our circSC manuscript☆12Updated 2 years ago
- Main repository for Drews et al. (Nature, 2022)☆38Updated last year
- An R package to plot maps of clone distributions in somatic evolution☆15Updated 10 months ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆23Updated 2 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆14Updated last year
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆11Updated 3 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated 11 months ago
- RNA editing tests☆16Updated 4 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆23Updated 4 months ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆42Updated 3 years ago
- ☆15Updated 4 years ago
- ☆17Updated 5 years ago
- R package of CSOmap(developing☆14Updated 2 years ago
- Micro DNA identification☆22Updated 3 years ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆20Updated 6 months ago
- Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel☆15Updated 2 years ago
- ☆30Updated 6 months ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated last month
- interactive visualization of single-cell transcriptomes☆11Updated 10 months ago
- ☆40Updated 3 months ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆14Updated last month
- ☆27Updated 3 months ago
- ☆14Updated last year
- ☆22Updated last year
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:☆17Updated 7 months ago
- Suite of analysis tools for spatial total RNA-sequencing☆11Updated last year