henssenlab / TreeShapedRearrangementsLinks
Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)
☆15Updated 5 years ago
Alternatives and similar repositories for TreeShapedRearrangements
Users that are interested in TreeShapedRearrangements are comparing it to the libraries listed below
Sorting:
- Scripts used for the ACT paper☆12Updated 4 years ago
- ☆19Updated 5 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆22Updated last week
- Analysis pipeline for our circSC manuscript☆14Updated 3 years ago
- ☆18Updated 2 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Updated 4 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated 2 years ago
- ☆12Updated 2 years ago
- https://molecular-neurogenetics.github.io/truster/☆11Updated 5 months ago
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆18Updated 4 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 9 months ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆11Updated last year
- Toolkit for single-cell copy number analysis☆26Updated 3 weeks ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆19Updated last year
- ☆19Updated 2 years ago
- ☆39Updated 4 months ago
- ☆17Updated 7 years ago
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆15Updated 2 months ago
- ☆18Updated 2 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated last year
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆21Updated 3 weeks ago
- A pipeline for Smooth-seq data analysis.☆10Updated 4 years ago
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆17Updated 5 months ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"☆11Updated 6 years ago
- ☆30Updated 4 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Updated last year
- ☆53Updated last year
- Micro DNA identification☆23Updated 4 years ago
- ☆26Updated 2 years ago