BIMSBbioinfo / pigx_chipseqLinks
Pipeline for Analysis of ChIP-Seq data
☆10Updated last year
Alternatives and similar repositories for pigx_chipseq
Users that are interested in pigx_chipseq are comparing it to the libraries listed below
Sorting:
- Python library for processing and visualizing Hi-C data☆20Updated 5 years ago
- ☆38Updated 2 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆45Updated 3 years ago
- A Python implementation of the original DI domain caller☆12Updated 5 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- scripts for analyzing the CVDC data.☆20Updated 6 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 9 months ago
- R package: TopDom - An efficient and Deterministic Method for identifying Topological Domains in Genomes☆21Updated 2 years ago
- TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.☆49Updated 3 years ago
- Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data☆24Updated 3 years ago
- ☆27Updated 3 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 6 months ago
- SingleCell Nanopore sequencing data analysis☆62Updated 7 months ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆23Updated last year
- Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.☆32Updated 2 years ago
- ☆20Updated last year
- ☆37Updated 6 years ago
- Long read to rMATS☆32Updated 2 years ago
- microRNA PREdiction From small RNA-seq data☆31Updated 8 years ago
- Improving gene isoform quantification with miniQuant☆31Updated 3 months ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated last year
- TEspeX - pipeline for Transposable Elements expression quantification☆21Updated 2 years ago
- ☆20Updated 2 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 4 years ago
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆14Updated 6 months ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆29Updated 6 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- ☆14Updated 7 years ago
- lncRNA-screen☆25Updated 8 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆37Updated 10 years ago