Interactive multiscale visualization for structural variation in human genomes
☆73Jul 21, 2026Updated last month
Alternatives and similar repositories for chromoscope
Users that are interested in chromoscope are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆30Mar 1, 2026Updated 6 months ago
- Search for activating regulatory variants in the tumor genome☆15Apr 11, 2025Updated last year
- CLI to automate Nextflow pipeline testing☆13Dec 15, 2025Updated 8 months ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆19Apr 2, 2020Updated 6 years ago
- eVITTA: an easy Visualization and Inference Toolbox for Transcriptome Analysis☆12Mar 23, 2024Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆28Jul 26, 2024Updated 2 years ago
- vembrane filters, sorts, and transforms VCF records using python expressions☆70Aug 25, 2026Updated last week
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆28Jun 25, 2026Updated 2 months ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆23Aug 1, 2024Updated 2 years ago
- ☆15May 27, 2025Updated last year
- Structural variant VCF annotation, duplicate removal and comparison☆38Oct 14, 2025Updated 10 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆127Jul 10, 2026Updated last month
- A simple script to run an alignment with nucmer and visualise its results.☆10Apr 17, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Combine structural variation outputs from long sequencing reads into a superior call set☆19Aug 6, 2025Updated last year
- que paquete☆10Jul 17, 2024Updated 2 years ago
- ☆16Apr 2, 2024Updated 2 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated last year
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads☆109Jun 25, 2026Updated 2 months ago
- Copy number caller for long read data including SNV utilization☆70Mar 31, 2025Updated last year
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆41May 19, 2026Updated 3 months ago
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆37Apr 20, 2026Updated 4 months ago
- ☆165Apr 13, 2026Updated 4 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- SNV calling from single cell sequencing☆119Nov 11, 2024Updated last year
- JTK -- a regional diploid genome assembler☆27Apr 22, 2026Updated 4 months ago
- structure detection program☆18Nov 20, 2024Updated last year
- Consensus genome annotation using OMA☆32Jan 14, 2026Updated 7 months ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆27Updated this week
- BWA-MEME: Faster BWA-MEM2 using learned-index☆138Jun 3, 2026Updated 2 months ago
- Interactive phylogenetic tree viewer/editor☆49Jul 12, 2023Updated 3 years ago
- rnalib: a python-based transcriptomics library☆14Jul 27, 2026Updated last month
- Pipeline for structural variant image curation and analysis.☆49Dec 5, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.☆435Aug 25, 2026Updated last week
- ☆81Jul 12, 2023Updated 3 years ago
- ☆18Jan 30, 2023Updated 3 years ago
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆14Mar 16, 2026Updated 5 months ago
- Map genetic variants and protein positions to protein interfaces in 3D☆13Sep 22, 2023Updated 2 years ago
- Merging, Annotation, Validation, and Illustration of Structural variants☆76Aug 22, 2023Updated 3 years ago
- ☆20Nov 17, 2025Updated 9 months ago