Bam to Pandas DataFrame, quickly
☆13May 10, 2025Updated 11 months ago
Alternatives and similar repositories for bamread
Users that are interested in bamread are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Rust Backend for PyRanges Operations. More featureful and much faster replacement for the NCLS library☆30Mar 27, 2026Updated 2 weeks ago
- pyranges/bioframe for polars☆18Jul 20, 2023Updated 2 years ago
- Library for visualising genomic features in Python.☆15May 12, 2017Updated 8 years ago
- Hypothesis extension for computational biology☆16Jan 23, 2023Updated 3 years ago
- a cythonized, extended version of the interval search tree in bx☆30Jun 4, 2019Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Fishers Exact Test for Python (Cython)☆65Mar 20, 2025Updated last year
- Simple implementations of attention modules adapted for the biological data domain.☆14May 20, 2025Updated 10 months ago
- Gencode UTR fix☆16Jan 11, 2023Updated 3 years ago
- 📊 A working, maintained copy of ggpy☆31Jul 11, 2019Updated 6 years ago
- An R package for Splice-aware quantification of translation using Ribo-seq data☆19Dec 20, 2023Updated 2 years ago
- A file watcher written in Rust☆11Dec 1, 2024Updated last year
- A simple pythonic interface to biomart.☆59Feb 6, 2020Updated 6 years ago
- Processing and plotting tools for genomics data☆22Mar 30, 2026Updated last week
- Genomic interval operations on Pandas DataFrames☆191Mar 2, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A modified Ziggurat Algorithm for efficiently generating exponentially- and normally-distributed PseudoRandom Numbers (PRNs).☆13May 21, 2025Updated 10 months ago
- Template for building a small workflow in Nextflow☆17May 2, 2022Updated 3 years ago
- ☆17Feb 27, 2023Updated 3 years ago
- Python-based UCSC genome browser snapshot-taker and gallery-maker☆12May 21, 2024Updated last year
- a minimal, scriptable genome browser for python☆53Dec 20, 2024Updated last year
- Sweep-line algorithm for genomic features. Detect overlaps on large files w/ minimal memory.☆10Sep 13, 2011Updated 14 years ago
- Explore and analyze biological sequence data☆17Aug 1, 2024Updated last year
- A cookiecutter template for a modern C++ project with python bindings☆32Jul 25, 2022Updated 3 years ago
- Terminal-based multiple sequence alignment (MSA) viewer designed for remote and HPC bioinformatics workflows.☆29Feb 3, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Library for indexing VCF files for random access searches by rsID☆17Mar 2, 2026Updated last month
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆15Feb 13, 2018Updated 8 years ago
- A library to analyse the structure of 1d loops and simulate loop extrusion by loop extruding factors.☆11Feb 10, 2025Updated last year
- 🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies☆17Jan 23, 2023Updated 3 years ago
- Bioinformatics Guide☆18Jul 25, 2021Updated 4 years ago
- Scripts and instructions to apply RiboTIE on Ribo-seq data☆19Jul 22, 2025Updated 8 months ago
- Python bindings to UCSC BigWig and BigBed library☆36Updated this week
- Variant Effect Prediction for Python☆16Apr 5, 2017Updated 9 years ago
- The command-line interface to GGD☆42Oct 16, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- conda recipes for genomic data☆84Jul 31, 2021Updated 4 years ago
- Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.☆38Jun 18, 2025Updated 9 months ago
- Bedfile perturbation tool☆17Mar 6, 2026Updated last month
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Apr 2, 2020Updated 6 years ago
- Integrating temporal gene expression modalities for trajectory inference and disease prediction☆10Sep 20, 2022Updated 3 years ago
- A simple script to add pdf-files to Zotero via CLI☆12May 17, 2020Updated 5 years ago
- Code and paper repository for the ICML paper "Learning population level diffusions with generative recurrent networks"☆11May 26, 2016Updated 9 years ago