pyranges / bamreadLinks
Bam to Pandas DataFrame, quickly
☆13Updated 7 months ago
Alternatives and similar repositories for bamread
Users that are interested in bamread are comparing it to the libraries listed below
Sorting:
- pyranges/bioframe for polars☆18Updated 2 years ago
- Rust Backend for PyRanges Operations. More featureful and much faster replacement for the NCLS library☆29Updated last week
- a minimal, scriptable genome browser for python☆53Updated last year
- Python bindings to UCSC BigWig and BigBed library☆35Updated 2 weeks ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆41Updated 2 months ago
- snakemake pipeline for Hi-C post-processing☆22Updated last year
- Container class to represent genomic locations and support genomic analysis☆27Updated last week
- Comparison of Hi-C Experiments using Structural Similarity.☆28Updated 2 years ago
- Gencode UTR fix☆15Updated 2 years ago
- Python reimplementation of hicrep with compatibility for sparse matrices☆18Updated 3 years ago
- Pyranges: a Python framework for ultrafast sequence interval operations☆34Updated 2 weeks ago
- Legend made easy for matplotlib☆31Updated 6 months ago
- Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.☆39Updated 7 months ago
- A fast dataloader for bigwig files made for machine learning☆28Updated 2 weeks ago
- Processing and plotting tools for genomics data☆21Updated last week
- Red-C data processing☆15Updated 2 years ago
- Blazing fast toolkit to work with .hic and .cool files☆42Updated this week
- python implementation of the PAGE algorithm☆18Updated last year
- Universal RObust Peak Annotator☆16Updated 2 years ago
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆16Updated last week
- Genomic Features in Python from BioConductor's AnnotationHub☆22Updated last week
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 3 years ago
- Elucidating the Utility of Genomic Elements with Neural Nets☆70Updated last year
- A Python library to visualize and analyze long-read transcriptomes☆64Updated 7 months ago
- Chromatin domains bursting with flavor☆12Updated 6 years ago
- Utilities for large scale distributed single cell data processing☆24Updated 2 weeks ago
- Architectural stripe detection from 3D genome conformation data☆18Updated 3 months ago
- Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer☆64Updated last month
- Universal Single-Cell Genomics Preprocessing package☆45Updated this week
- A Python package for fast operations on 1-dimensional genomic signal tracks☆23Updated 5 years ago