Factorize-Recover for Perturb-seq analysis (FR-Perturb)
☆26Nov 4, 2025Updated 9 months ago
Alternatives and similar repositories for FR-Perturb
Users that are interested in FR-Perturb are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A flexible and fast sgRNA counter from FASTQ Files☆11Jun 17, 2026Updated last month
- Mediated Expression Score Regression (MESC)☆29Nov 4, 2025Updated 9 months ago
- ☆39Sep 5, 2024Updated last year
- ☆11Jul 21, 2021Updated 5 years ago
- 🌓 Allele specific analyses across cell states and conditions☆11Nov 28, 2022Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆13Sep 8, 2020Updated 5 years ago
- Analysis code and results for dreamlet☆11Apr 16, 2026Updated 3 months ago
- R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening …☆25Oct 3, 2023Updated 2 years ago
- ☆38Jun 8, 2026Updated 2 months ago
- ☆73Aug 19, 2023Updated 2 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆27Jan 25, 2022Updated 4 years ago
- Predict cell cycle phase in a continuum from single-cell RNA-seq data☆14Nov 14, 2020Updated 5 years ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆39Updated this week
- ☆57May 22, 2018Updated 8 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Scripts to reproduce analyses of tradeSeq paper.☆16Feb 5, 2020Updated 6 years ago
- Jupyter Notebook extension that adds collapsable cells.☆10Jun 21, 2020Updated 6 years ago
- GitHub template repository for creating new barebones Nextflow pipelines, using the Arcadia-Science/nextflow-template cookiecutter templa…☆13Mar 21, 2023Updated 3 years ago
- Repository detailing updated allowlisting and clonal analysis workflow☆11Feb 1, 2025Updated last year
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆182Feb 25, 2025Updated last year
- methods for functional summary-based imputation☆108Mar 17, 2026Updated 4 months ago
- A Nextflow pipeline to identify quality control issues with new sequencing data.☆30Feb 17, 2023Updated 3 years ago
- deconvolution for RNAseq and bisulfite sequencing☆12Aug 17, 2020Updated 5 years ago
- ☆31Mar 18, 2022Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Learning disentangled representations of single-cell data for high-quality generation☆16Mar 16, 2024Updated 2 years ago
- Core pipeline of GenoML☆16Aug 3, 2020Updated 6 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆19Jun 29, 2022Updated 4 years ago
- Code for reproducing "Exploring genetic interaction manifolds constructed from rich single-cell phenotypes"☆71Jun 6, 2020Updated 6 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Oct 11, 2019Updated 6 years ago
- PM520 Advanced Statistical Computing☆16Apr 3, 2026Updated 4 months ago
- ☆13Sep 3, 2025Updated 11 months ago
- Stochastic trace estimation using JAX☆20Jun 29, 2026Updated last month
- Epigenomics Program pipeline to analyze SHARE-seq data.☆23Mar 30, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Analysis code for the TAP-seq manuscript.☆11Jun 25, 2021Updated 5 years ago
- ☆16Updated this week
- Tutorials for the crisprVerse☆16Feb 10, 2025Updated last year
- Code repository for the snRNA-seq cross-tissue atlas project☆21Feb 22, 2022Updated 4 years ago
- An end-to-end computational pipeline for large Perturb-seq screens☆16Jul 27, 2026Updated 2 weeks ago
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Dec 20, 2018Updated 7 years ago
- Evaluation framework for computationally inferred gene networks from single-cell data.☆19Oct 23, 2025Updated 9 months ago