douglasyao / FR-Perturb
Factorize-Recover for Perturb-seq analysis (FR-Perturb)
☆20Updated last month
Alternatives and similar repositories for FR-Perturb:
Users that are interested in FR-Perturb are comparing it to the libraries listed below
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆39Updated 3 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆72Updated 4 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆60Updated 8 months ago
- Single-cell disease relevance score (scDRS)☆119Updated 3 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆95Updated this week
- MAGIC - imputation and de-noising single-cell RNA seq data sets☆26Updated 5 years ago
- ☆60Updated 4 years ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆60Updated 3 years ago
- ☆59Updated 5 years ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆40Updated last year
- R package for pathway analysis in scRNA-seq data☆66Updated 5 months ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆68Updated 4 months ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆36Updated last week
- ☆47Updated 2 years ago
- Gene group activity utility functions for Scanpy☆65Updated 3 weeks ago
- A tool that allows to get UMI counts from a single cell protein assay☆79Updated 5 months ago
- Functional Inference of Gene Regulation☆39Updated 6 months ago
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆42Updated 2 weeks ago
- Single-Cell Clustering Assessment Framework☆97Updated last year
- identifying disease critical cell types and programs from single cell RNAseq☆52Updated 2 years ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆59Updated this week
- Tools used in Human Cell Landscape(HCL)☆53Updated 4 years ago
- R implementation of GeneTrajectory☆51Updated 9 months ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆67Updated last year
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆92Updated last year
- Publication Page for Satpathy*, Granja* et al 2019☆92Updated 4 years ago
- Publication Page for MPAL Paper 2019☆77Updated 4 years ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆62Updated 2 years ago
- Single cell omics biology annotations☆48Updated 3 months ago