theislab / greatpy
GREAT algorithm in Python
☆10Updated 2 years ago
Alternatives and similar repositories for greatpy:
Users that are interested in greatpy are comparing it to the libraries listed below
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated 5 months ago
- ☆15Updated 8 months ago
- Information-based dimensionality reduction☆29Updated last month
- scGRO-seq analyses codes☆11Updated last year
- scOpen: single-cell open chromatin analysis via NMF modelling☆25Updated last year
- ☆22Updated 3 months ago
- ☆31Updated 9 months ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- Pipeline for Universal Mapping of ATAC-seq☆24Updated 9 months ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment☆20Updated 9 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆18Updated last year
- High-definition modeling of chromatin + transcriptomics data☆21Updated 2 months ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆27Updated 3 months ago
- Vaeda method for computational doublet annotation☆15Updated 6 months ago
- Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)☆12Updated 3 years ago
- An end-to-end computational pipeline for large Perturb-seq screens☆12Updated 2 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆20Updated 10 months ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆36Updated 2 weeks ago
- ☆44Updated 5 months ago
- Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper☆24Updated 2 years ago
- Enformer Celltyping is a tensorflow, multi-headed attention based model that incorporates distal effects of Deoxyribonucleic Acid (DNA) i…☆11Updated 2 months ago
- Code for reproducing the Sei manuscript results☆16Updated 3 years ago
- Genomic Features in Python from BioConductor's AnnotationHub☆20Updated this week
- ☆12Updated 3 years ago
- Analyzing chromatin accessibility data in R☆18Updated last year
- TF analysis from epigenetic and Hi-C data☆17Updated last month
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated 7 months ago
- Multi-study integration of cellular trajectories☆18Updated 4 years ago