buenrostrolab / PRINTLinks
☆15Updated last month
Alternatives and similar repositories for PRINT
Users that are interested in PRINT are comparing it to the libraries listed below
Sorting:
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 5 months ago
- ☆49Updated 10 months ago
- ☆35Updated 9 months ago
- ☆32Updated 5 months ago
- cell type specific, trait-associated gene regulation☆27Updated 2 months ago
- ☆25Updated 3 months ago
- ☆34Updated last year
- An end-to-end computational pipeline for large Perturb-seq screens☆13Updated 2 months ago
- Whole mouse brain snATAC seq analysis☆26Updated 2 months ago
- A method for analyzing scATAC-seq experiments.☆31Updated last week
- Functional Inference of Gene Regulation☆45Updated 11 months ago
- Python package to predict enhancer-gene interactions supervised on CRISPRi data☆14Updated last year
- ☆17Updated 11 months ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated 9 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 8 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 6 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- Pipeline to run scE2G☆26Updated last week
- Pipeline for Universal Mapping of ATAC-seq☆25Updated last year
- Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell d…☆14Updated 8 months ago
- R package IReNA☆28Updated 7 months ago
- R and MATLAB scripts for MAGICAL☆11Updated last year
- Benchmark of GRNs using the GRETA pipeline☆24Updated 3 months ago
- ☆18Updated 2 months ago
- ☆39Updated 8 months ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆33Updated 3 years ago
- Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020☆16Updated last year
- Snakemake workflow for comparing E-G links to experimental data☆18Updated 3 weeks ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 3 months ago