☆25Dec 10, 2025Updated 4 months ago
Alternatives and similar repositories for PRINT
Users that are interested in PRINT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆71Apr 16, 2026Updated 2 weeks ago
- ☆38Sep 5, 2024Updated last year
- Inferring multi-modality dynamics for single cell genomics data☆13Dec 18, 2025Updated 4 months ago
- Multi-omic velocity inference☆118Oct 23, 2024Updated last year
- R package for reading in & working with NucleoATAC outputs☆26Oct 13, 2018Updated 7 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- CREsted is a Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for desi…☆67Updated this week
- TACO: TFBS-Aware Cis-Regulatory Element Optimization☆22Aug 1, 2025Updated 9 months ago
- ☆20Jan 1, 2022Updated 4 years ago
- Snakemake workflow for comparing E-G links to experimental data☆23Mar 9, 2026Updated last month
- GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of atlas-level single cell data.☆14Jun 13, 2023Updated 2 years ago
- code to run EPInformer for gene expression prediction and gene-enhancer link prediction☆52Jan 19, 2026Updated 3 months ago
- ☆14Apr 11, 2024Updated 2 years ago
- Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcript…☆11Jan 15, 2024Updated 2 years ago
- R functions for very fast eigenvector calculation☆11Jan 18, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A clustering algorithm that can perform internal validation inspired by forest fire dynamics and self-organized criticality☆18May 18, 2022Updated 3 years ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆27Aug 30, 2024Updated last year
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆40Mar 27, 2025Updated last year
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆28Feb 21, 2023Updated 3 years ago
- ☆25Aug 15, 2023Updated 2 years ago
- ☆21Feb 15, 2025Updated last year
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆95Nov 13, 2025Updated 5 months ago
- ☆42Jan 12, 2026Updated 3 months ago
- Python script to quickly extract promoter and terminator regions with the NCBI API. Search for the presence of individual pattern or tran…☆28Jun 4, 2025Updated 10 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- RNA velocity validation☆22Mar 16, 2022Updated 4 years ago
- Deep learning models to predict enhancers in different Drosophila embryo tissues☆20Dec 10, 2023Updated 2 years ago
- p-IgGen: A Generative Paired Antibody Language Model☆13May 6, 2025Updated 11 months ago
- For fine-tuning Enformer using paired WGS & gene expression data☆30Aug 27, 2025Updated 8 months ago
- ☆29Sep 4, 2023Updated 2 years ago
- ☆20Apr 30, 2025Updated last year
- Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal☆246Mar 23, 2026Updated last month
- ☆27Jun 5, 2025Updated 10 months ago
- ☆15Aug 5, 2022Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Feb 19, 2026Updated 2 months ago
- CellAnn☆12Nov 3, 2023Updated 2 years ago
- Learning meaningful representations of genes☆21Jul 7, 2025Updated 9 months ago
- Genome Assembly 102☆18Apr 23, 2025Updated last year
- High-definition modeling of chromatin + transcriptomics data☆26Jan 27, 2026Updated 3 months ago
- ☆26Apr 9, 2025Updated last year
- Code for paired TCR data analysis from TIRTL-seq experiments☆10Nov 24, 2025Updated 5 months ago