Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.
☆39May 3, 2025Updated 9 months ago
Alternatives and similar repositories for clodius
Users that are interested in clodius are comparing it to the libraries listed below
Sorting:
- Builds a docker container wrapping higlass-server and higlass-client in nginx☆32May 31, 2022Updated 3 years ago
- Server component for HiGlass that manages and serves tiled data☆21May 23, 2023Updated 2 years ago
- HiGlass track for displaying arcs between disconnected regions☆10Dec 13, 2022Updated 3 years ago
- Slides and demos from our SciPyConf 2019 talk☆13Sep 28, 2021Updated 4 years ago
- Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer☆64Updated this week
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆13Dec 22, 2025Updated 2 months ago
- A utility script to manage local docker instances of HiGlass☆24Jul 6, 2023Updated 2 years ago
- Lightweight converter between hic and cool contact matrices.☆74Jul 15, 2024Updated last year
- A versatile tool to perform pile-up analysis on Hi-C data in .cool format.☆80Oct 31, 2024Updated last year
- Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).☆10Jun 5, 2021Updated 4 years ago
- Python bindings to UCSC BigWig and BigBed library☆36Jan 28, 2026Updated last month
- A toolkit for analyzing architectural stripes☆20Dec 1, 2024Updated last year
- A cool place to store your Hi-C☆231Updated this week
- Fast, flexible and extensible genome browser.☆339Updated this week
- Chromatin domains bursting with flavor☆12Dec 29, 2019Updated 6 years ago
- Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning wit…☆69Dec 14, 2022Updated 3 years ago
- ☆16Nov 3, 2025Updated 3 months ago
- The tools for your .cool's☆160Jul 7, 2025Updated 7 months ago
- Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps☆69Dec 16, 2022Updated 3 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆20Sep 12, 2023Updated 2 years ago
- Cooler demo using a Jupyter notebook Binder☆18Sep 24, 2020Updated 5 years ago
- SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.☆17Jun 1, 2023Updated 2 years ago
- A modular Hi-C mapping pipeline☆101Dec 5, 2024Updated last year
- Visualize genomic data using webgl and webworkers, in an effort to provide a fluid, high-performance user experience.☆11May 24, 2024Updated last year
- A library to analyse the structure of 1d loops and simulate loop extrusion by loop extruding factors.☆11Feb 10, 2025Updated last year
- Genomic interval operations on Pandas DataFrames☆189Feb 2, 2026Updated 3 weeks ago
- FAN-C: Framework for the ANalysis of C-like data☆121Mar 13, 2024Updated last year
- A python extension for quick access to bigWig and bigBed files☆239Jan 14, 2026Updated last month
- Simple codes and lines to process 3C/Hi-C data☆18Oct 21, 2021Updated 4 years ago
- Architectural stripe detection from 3D genome conformation data☆18Sep 15, 2025Updated 5 months ago
- Read Tabix-indexed files, either with .tbi or .csi indexes, in node or the browser☆14Dec 24, 2025Updated 2 months ago
- A visual exploration and hypothesis testing tool for 3D genomics☆13Apr 12, 2024Updated last year
- 1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates☆92Jan 28, 2025Updated last year
- Buffer compression and transformation codecs☆36Feb 21, 2025Updated last year
- A 3D genome data processing tutorial for ISMB/ECCB 2017☆52Jul 21, 2017Updated 8 years ago
- Red-C data processing☆15Apr 18, 2023Updated 2 years ago
- Extract 3D contacts (.pairs) from sequencing alignments☆125Feb 3, 2026Updated 3 weeks ago
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆77Jul 22, 2025Updated 7 months ago
- snakemake pipeline for Hi-C post-processing☆22Jun 27, 2024Updated last year