Alternatives and similar repositories for scPrinter

Users that are interested in scPrinter are comparing it to the libraries listed below

• YosefLab / popV
  ☆80Updated last week
• pinellolab / dictys
  Context specific and dynamic gene regulatory network reconstruction and analysis
  ☆120Updated 3 weeks ago
• yelabucsf / scrna-parameter-estimation
  Direct estimation of mean and covariance from single cell RNA seq experiments
  ☆112Updated 2 months ago
• HYsxe / PRINT
  ☆35Updated 10 months ago
• aertslab / pycisTopic
  pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.
  ☆70Updated last week
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆51Updated 3 months ago
• KlugerLab / GeneTrajectory
  R implementation of GeneTrajectory
  ☆62Updated last year
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆70Updated last year
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆46Updated last year
• Teichlab / cellhint
  A tool for semi-automatic cell type harmonization and integration
  ☆108Updated 4 months ago
• welch-lab / MultiVelo
  Multi-omic velocity inference
  ☆110Updated 9 months ago
• theislab / scib-pipeline
  Snakemake pipeline that works with the scIB package to benchmark data integration methods.
  ☆75Updated 6 months ago
• snehamitra / SCARlink
  ☆55Updated last month
• theislab / regvelo
  inferring regulatory cellular dynamics
  ☆49Updated 2 weeks ago
• immunogenomics / LISI
  Methods to compute Local Inverse Simpson's Index (LISI)
  ☆67Updated 3 years ago
• quadbio / scMultiome_analysis_vignette
  Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis
  ☆63Updated last year
• BayraktarLab / cell2fate
  Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.
  ☆79Updated 4 months ago
• cantinilab / Circe
  Co-accessibility network from single-cell ATAC-seq data. Python code with AnnData, based on Cicero algorithm.
  ☆22Updated last month
• ShobiStassen / VIA
  trajectory inference
  ☆104Updated 6 months ago
• BlishLab / scriabin
  Analysis of cell-cell communication at single-cell resolution
  ☆103Updated 10 months ago
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆63Updated 3 weeks ago
• rargelaguet / mouse_organogenesis_10x_multiome_publication
  Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  ☆40Updated 2 years ago
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆83Updated 7 months ago
• zktuong / dandelion
  dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data
  ☆117Updated this week
• emdann / milopy
  Python implementation of Milo for differential abundance testing on KNN graph
  ☆74Updated 5 months ago
• jfnavarro / st_pipeline
  ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …
  ☆85Updated 4 months ago
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆41Updated 6 months ago
• SCCAF / sccaf
  Single-Cell Clustering Assessment Framework
  ☆105Updated last year
• SONGDONGYUAN1994 / scDesign3
  scDesign3 generates realistic in silico data for multimodal single-cell and spatial omics
  ☆99Updated 5 months ago
• tanaylab / metacells
  Metacells - Single-cell RNA Sequencing Analysis
  ☆110Updated 10 months ago