Alternatives and similar repositories for scPrinter

Users that are interested in scPrinter are comparing it to the libraries listed below

• YosefLab / popV
  ☆89Updated this week
• yelabucsf / scrna-parameter-estimation
  Direct estimation of mean and covariance from single cell RNA seq experiments
  ☆128Updated 9 months ago
• aertslab / pycisTopic
  pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.
  ☆79Updated last week
• HYsxe / PRINT
  ☆37Updated last year
• immunogenomics / SCENT
  Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA
  ☆82Updated 9 months ago
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆51Updated last year
• pinellolab / dictys
  Context specific and dynamic gene regulatory network reconstruction and analysis
  ☆127Updated 2 months ago
• snehamitra / SCARlink
  ☆62Updated 2 months ago
• Teichlab / cellhint
  A tool for semi-automatic cell type harmonization and integration
  ☆118Updated 3 months ago
• quadbio / scMultiome_analysis_vignette
  Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis
  ☆70Updated last year
• welch-lab / MultiVelo
  Multi-omic velocity inference
  ☆116Updated last year
• atarashansky / SAMap
  SAMap: Mapping single-cell RNA sequencing datasets from evolutionarily distant organisms.
  ☆88Updated last month
• ShobiStassen / VIA
  trajectory inference
  ☆105Updated last year
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆53Updated 9 months ago
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆72Updated 2 years ago
• tuonglab / dandelion
  dandelion - A single cell BCR/TCR V(D)J-seq analysis package
  ☆124Updated this week
• cantinilab / Circe
  Co-accessibility network from single-cell ATAC-seq data. Python code with AnnData, based on Cicero algorithm.
  ☆33Updated last week
• BlishLab / scriabin
  Analysis of cell-cell communication at single-cell resolution
  ☆106Updated last year
• beyondpie / CEMBA_wmb_snATAC
  Whole mouse brain snATAC seq analysis
  ☆29Updated 9 months ago
• BayraktarLab / cell2fate
  Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.
  ☆85Updated 10 months ago
• cistrome / MIRA
  Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.
  ☆66Updated 7 months ago
• timoast / sinto
  Tools for single-cell data processing
  ☆132Updated last year
• Durenlab / LINGER
  ☆125Updated last week
• EngreitzLab / scE2G
  Pipeline to run scE2G
  ☆32Updated last week
• satijalab / PASTA
  ☆21Updated last year
• immunogenomics / LISI
  Methods to compute Local Inverse Simpson's Index (LISI)
  ☆73Updated 4 years ago
• swaruplabUCI / ArchRtoSignac
  An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)
  ☆37Updated last year
• di-0579 / Spatial_epigenome-transcriptome_co-sequencing
  ☆34Updated 2 years ago
• KlugerLab / GeneTrajectory
  R implementation of GeneTrajectory
  ☆68Updated last year
• TheHumphreysLab / plot1cell
  ☆121Updated 5 months ago