Fork of the KaKs_Calculator2.0 project https://sourceforge.net/projects/kakscalculator2
☆14Jul 22, 2026Updated this week
Alternatives and similar repositories for kakscalculator2
Users that are interested in kakscalculator2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆35Jan 15, 2025Updated last year
- A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets☆13Feb 7, 2025Updated last year
- ☆19Jul 21, 2026Updated last week
- ☆26Dec 15, 2025Updated 7 months ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Modular Genome Assembly, Annotation and Assessment Pipeline☆21Mar 16, 2026Updated 4 months ago
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆17Sep 17, 2025Updated 10 months ago
- Draw genetic map (linkage map) in R☆14Nov 12, 2017Updated 8 years ago
- tspex: tissue-specificity calculator☆39Jul 4, 2023Updated 3 years ago
- Support material for the "Comparative Genomics Laboratory" classes of the MSc in Biodiversity and Evolution at the University of Bologna.☆13Feb 27, 2026Updated 5 months ago
- Formats Roary output for viewing in FriPan☆11May 23, 2018Updated 8 years ago
- R package for comparison of synteny conservation at the genome-wide scale.☆16Jun 6, 2024Updated 2 years ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆32Nov 9, 2025Updated 8 months ago
- Plant genome assembly and annotation pipeline using snakemake☆55May 14, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- a machine learning model to identify nucleotide features determining RNA subcellular localization☆13Mar 11, 2023Updated 3 years ago
- Notes on single-cell Hi-C technologies, tools, and data☆89Jun 29, 2026Updated last month
- ☆16Mar 26, 2026Updated 4 months ago
- This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.☆32Apr 2, 2026Updated 3 months ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆70Apr 17, 2026Updated 3 months ago
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 3 years ago
- Analysis tools for PhIP-seq experiments☆12Jan 24, 2022Updated 4 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Mar 3, 2020Updated 6 years ago
- Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.☆12Feb 25, 2021Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…☆15Apr 14, 2023Updated 3 years ago
- HyPhy tutorials☆11Apr 9, 2018Updated 8 years ago
- Finding regions of similarity between plasmids☆17Jul 15, 2026Updated 2 weeks ago
- A tool for plotting CAFE5 gene family expansion/contraction result☆37Sep 22, 2023Updated 2 years ago
- Pathway Tools multiprocessing wrapper (for PathoLogic).☆16Dec 18, 2025Updated 7 months ago
- I often use some of the self-written programs.☆16Jun 12, 2026Updated last month
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆12Nov 15, 2024Updated last year
- Tool for monitoring and anomaly detection of 3D Concrete Printing using Computer Vision☆14Oct 18, 2022Updated 3 years ago
- Here, we report telomere-to-telomere (T2T) gap-free genomes for domesticated pepper Capsicum annuum and wild relative Capsicum rhomboideu…☆13Feb 18, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- The GAN model for designing AMP☆17Aug 19, 2025Updated 11 months ago
- iTAK☆49Apr 8, 2026Updated 3 months ago
- Whole Genome Annotation Pipeline☆16Jun 20, 2025Updated last year
- PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. Please report only **techni…☆201Jan 29, 2026Updated 5 months ago
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆293Oct 4, 2025Updated 9 months ago
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆21Jan 14, 2026Updated 6 months ago
- Version 5 of the CAFE phylogenetics software☆174Mar 16, 2026Updated 4 months ago