FredHutch / EChO
Enhanced Chromatin Occupancy (EChO)
☆12Updated 5 years ago
Alternatives and similar repositories for EChO:
Users that are interested in EChO are comparing it to the libraries listed below
- ☆16Updated 6 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆55Updated 2 weeks ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆43Updated last year
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- An R package to analyze single-cell V(D)J data☆24Updated last year
- Isoform co-usage networks from single-cell RNA-seq data☆15Updated last year
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆47Updated 3 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- Bead-based single-cell atac processing☆31Updated 3 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Paired Insertion Counting for snATAC-seq data☆17Updated 6 months ago
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23Updated last week
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆21Updated 3 months ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆42Updated 2 years ago
- ☆33Updated 5 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆29Updated 2 years ago
- Detection of differential translated genes using Ribo-seq☆15Updated 3 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆16Updated last month
- Clone identification from single-cell data☆61Updated 2 years ago
- RNA editing tests☆17Updated 4 years ago
- scover☆23Updated last year
- Scripts to import your FeatureCounts output into DEXSeq☆33Updated 6 years ago
- Peak caller for CUT&TAG data☆26Updated 2 years ago
- Genomic coordinates of problematic genomic regions as GRanges☆35Updated 3 months ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 3 years ago
- Robust Allele Specific Quantification and quality controL☆39Updated 3 years ago
- A toolkit for working with ATAC-seq data.☆24Updated 9 months ago
- ☆15Updated 9 months ago
- Code for the empty droplet and cell detection project from the HCA Hackathon.☆20Updated 6 years ago