Altius / hotspot2
Implementation of hotspot2 by Eric Rynes
☆17Updated last year
Alternatives and similar repositories for hotspot2:
Users that are interested in hotspot2 are comparing it to the libraries listed below
- RAGE-seq scripts☆18Updated 3 years ago
- ☆38Updated 5 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- ENCODE DNase-seq pipeline essentials for running on dnanexus.☆12Updated 5 years ago
- ☆19Updated 7 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample☆31Updated 2 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 11 months ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆32Updated 4 months ago
- This script use to analyze the immune repertoire sequenced by high throughtput sequencing☆25Updated 3 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆47Updated 6 years ago
- HLA typing for Sanger Based Test☆17Updated 2 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- Tool package to perform in-silico CRISPR analysis and assessment☆25Updated last year
- simplified cellranger for long-read data☆18Updated 3 weeks ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from…☆28Updated last week
- Motif Scan and Enrichment Analysis (MoSEA)☆16Updated 4 years ago
- Bioinformatic pipeline for identifying dsDNA breaks by marker based incorporation, such as breaks induced by designer nucleases like Cas9…☆21Updated 2 weeks ago
- ☆16Updated last year
- ☆38Updated 7 months ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆27Updated 3 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 2 months ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- 3D hotspot mutation proximity analysis tool☆47Updated 2 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆42Updated 2 years ago
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆23Updated 3 years ago
- chia pet analysis software☆25Updated 6 years ago
- An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.☆4Updated last year