lhqing / cemba_dataLinks
Mapping pipeline for snmC-seq based technologies.
☆21Updated last year
Alternatives and similar repositories for cemba_data
Users that are interested in cemba_data are comparing it to the libraries listed below
Sorting:
- ☆49Updated last year
- ☆32Updated 7 months ago
- ☆33Updated 6 years ago
- ☆30Updated 2 years ago
- scWGCNA☆61Updated 2 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 10 months ago
- Single-cell Case Control Analysis☆52Updated 9 months ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Functional Inference of Gene Regulation☆46Updated last year
- ☆35Updated 11 months ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆41Updated 3 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 7 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 3 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆56Updated 4 years ago
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Updated 5 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 7 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆41Updated 3 years ago
- ☆23Updated last year
- ☆37Updated last year
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆50Updated last year
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated 11 months ago
- Repository to reproduce all analyses for Lareau*, Ludwig*, et al. 2020☆16Updated 2 years ago
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆20Updated last year
- Single Cell Analysis of Five'Ends☆50Updated last year