☆16Oct 3, 2025Updated 5 months ago
Alternatives and similar repositories for DNALongBench
Users that are interested in DNALongBench are comparing it to the libraries listed below
Sorting:
- [NeurIPS 2024] Model Decides How to Tokenize: Adaptive DNA Sequence Tokenization with MxDNA☆22Apr 2, 2025Updated 11 months ago
- Official implementation of "Learning the language of protein structures"☆41Jun 20, 2025Updated 8 months ago
- A spatial genome aligner for analyzing multiplexed DNA-FISH imaging data.☆18Oct 10, 2023Updated 2 years ago
- Mapping pipeline for snmC-seq based technologies.☆20Sep 25, 2023Updated 2 years ago
- NRPSpredictor2 is a program to predict the specificity of bacterial and fungal adenylation domains.☆11Oct 7, 2019Updated 6 years ago
- ☆27May 22, 2025Updated 9 months ago
- A GWAS fine-mapping pipeline used in CAUSALdb☆27May 1, 2022Updated 3 years ago
- Collection of mRNA benchmarks☆46Feb 15, 2026Updated 2 weeks ago
- ☆71Nov 21, 2025Updated 3 months ago
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆89Dec 10, 2025Updated 2 months ago
- AIDO.ModelGenerator is a software stack powering the development of an AI-driven Digital Organism (AIDO) by enabling researchers to adapt…☆104Feb 25, 2026Updated last week
- ☆18Dec 5, 2024Updated last year
- ☆37Sep 5, 2024Updated last year
- Toolkit for single-cell DNA methylation analysis.☆46Feb 23, 2026Updated last week
- Minimum Bait Cover Toolkit Syotti.☆13Jan 22, 2025Updated last year
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated 11 months ago
- Code for improving the performance of sequence-to-expression models for making individual-specific gene expression predictions by fine-tu…☆15Dec 12, 2025Updated 2 months ago
- Variational Auto Encoders for learning binding signatures of transcription factors☆14Mar 14, 2024Updated last year
- This is for the AI enzyme design course☆13Nov 10, 2025Updated 3 months ago
- Pipeline for HiCAR data, a robust and sensitive multi-omic co-assay for simultaneous measurement of transcriptome, chromatin accessibilit…☆12Jun 3, 2025Updated 9 months ago
- ☆13Dec 3, 2024Updated last year
- Primary RNA sequence model☆42May 20, 2024Updated last year
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆42Jul 6, 2023Updated 2 years ago
- Adata Viewer: Head/Less/Shape h5ad file in terminal☆12Mar 19, 2025Updated 11 months ago
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated last year
- Codes to run deltaSVM models to predict allelic TF binding☆10Apr 5, 2021Updated 4 years ago
- A biological dual-language foundation model☆12Jun 16, 2025Updated 8 months ago
- API for the IGS data portal☆11May 6, 2021Updated 4 years ago
- R package: determining cutoff values from bimodal data☆11Mar 17, 2024Updated last year
- ☆17Apr 14, 2025Updated 10 months ago
- Generating Protein Variants with Different Generative Models (HMM, VAE, ESM-2, ProtGPT2)☆11Mar 14, 2024Updated last year
- DeepSoluE☆14Sep 18, 2023Updated 2 years ago
- ☆13Apr 23, 2025Updated 10 months ago
- Genome annotation pre-publication results☆25Updated this week
- The official implementation of NeurIPS2024 paper "SubgDiff: A Subgraph Diffusion Model to Improve Molecular Representation Learning."☆10May 28, 2025Updated 9 months ago
- Modeling Spatio-temporal Dynamics of Chromatin Marks☆12Aug 2, 2021Updated 4 years ago
- ☆12Nov 9, 2020Updated 5 years ago
- Modeling Enhancer-Promoter Interactions with Attention-Based Neural Networks☆10Feb 13, 2018Updated 8 years ago
- ☆10Jun 9, 2025Updated 8 months ago