ClairS: a deep-learning method for long-read tumor–normal pair somatic small variant calling
☆113Jul 17, 2026Updated last month
Alternatives and similar repositories for ClairS
Users that are interested in ClairS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆93Jul 29, 2026Updated 2 weeks ago
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆387Jul 9, 2026Updated last month
- A tool for somatic structural variant calling using long reads☆177Jun 8, 2026Updated 2 months ago
- SV detection tool for nanopore sequence reads☆98Mar 25, 2026Updated 4 months ago
- Clair3-RNA - a long-read small variant caller for RNA sequencing data☆43Apr 16, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆130Jul 22, 2026Updated 3 weeks ago
- Somatic structural variant caller for long-read data☆93Jun 30, 2026Updated last month
- DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal and tumor-only sequencing …☆316Mar 5, 2026Updated 5 months ago
- WDL’s and Dockerfiles for assembly QC process☆73Jun 12, 2026Updated 2 months ago
- Tumour-only somatic mutation calling using long reads☆29Oct 28, 2024Updated last year
- ☆85Jan 6, 2025Updated last year
- Open Human Genome Library☆67Dec 22, 2025Updated 7 months ago
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆14Mar 16, 2026Updated 5 months ago
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆22Nov 20, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A genomic k-mer counter (and sequence utility) with nice features.☆185Jul 21, 2026Updated 3 weeks ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆86Updated this week
- Tandem repeat expansion detection or genotyping from long-read alignments☆170Mar 25, 2026Updated 4 months ago
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆87May 27, 2026Updated 2 months ago
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads☆109Jun 25, 2026Updated last month
- a long read simulator that can imitate many types of read problems☆298Jul 24, 2026Updated 3 weeks ago
- ☆27Nov 14, 2025Updated 9 months ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆188Updated this week