HKU-BAL / ClairSLinks
ClairS - a deep-learning method for long-read somatic small variant calling
☆87Updated last month
Alternatives and similar repositories for ClairS
Users that are interested in ClairS are comparing it to the libraries listed below
Sorting:
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆66Updated 4 months ago
- Variant calling tool for long-read sequencing data☆112Updated 4 months ago
- Tandem repeat expansion detection or genotyping from long-read alignments☆120Updated this week
- GenMap - Fast and Exact Computation of Genome Mappability☆110Updated last year
- SV detection tool for nanopore sequence reads☆93Updated 4 months ago
- ☆74Updated 7 months ago
- A complete diploid human genome☆124Updated last week
- Visualise and analyse nanopore (ONT) raw signals☆119Updated 2 weeks ago
- Research release basecalling models and configurations☆115Updated 2 months ago
- A tool for somatic structural variant calling using long reads☆141Updated last week
- A tool to identify, orient, trim and rescue full length cDNA reads☆82Updated 3 years ago
- RNA modifications detection from Nanopore dRNA-Seq data☆86Updated 2 weeks ago
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆76Updated 4 months ago
- ☆49Updated 11 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated 3 months ago
- Toolkit for calling structural variants using short or long reads☆107Updated this week
- Quality control tools for nanopore sequencing data☆109Updated 9 months ago
- ☆100Updated last week
- Tandem repeat genotyping and visualization from PacBio HiFi data☆122Updated last week
- Somatic structural variant caller for long-read data☆78Updated 2 months ago
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆68Updated last year
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆68Updated 2 years ago
- vcfdist: Accurately benchmarking phased variant calls☆83Updated 2 weeks ago
- cDNA read preprocessing☆77Updated last year
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆57Updated this week
- Wally: Visualization of aligned sequencing reads and contigs☆118Updated 3 months ago
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆194Updated 2 months ago
- Long read aligner☆115Updated 2 years ago
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆57Updated last year