HKU-BAL / ClairS
ClairS - a deep-learning method for long-read somatic small variant calling
☆75Updated last week
Related projects ⓘ
Alternatives and complementary repositories for ClairS
- Tandem repeat genotyping and visualization from PacBio HiFi data☆106Updated this week
- Research release basecalling models and configurations☆103Updated 5 months ago
- ☆102Updated 2 months ago
- Variant calling tool for long-read sequencing data☆101Updated last week
- Fast and accurate coordinate conversion between assemblies☆110Updated 2 months ago
- Toolkit for calling structural variants using short or long reads☆99Updated this week
- A tool for somatic structural variant calling using long reads☆105Updated 2 weeks ago
- Somatic structural variant caller for long-read data☆50Updated this week
- A complete diploid human genome☆103Updated 2 months ago
- Pangenome-based genome inference☆114Updated this week
- PBSIM3: a simulator for all types of PacBio and ONT long reads☆65Updated 8 months ago
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆128Updated last week
- Wally: Visualization of aligned sequencing reads and contigs☆108Updated 2 months ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆81Updated 2 years ago
- ☆76Updated last week
- ☆105Updated this week
- Pairwise whole genome aligner☆139Updated this week
- Constructing a pangenome gene graph☆174Updated 4 months ago
- Tandem repeat expansion detection or genotyping from long-read alignments☆71Updated last month
- Visualise and analyse nanopore (ONT) raw signals☆108Updated last week
- ☆34Updated last week
- ☆48Updated 3 months ago
- Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…☆75Updated 2 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 3 weeks ago
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆50Updated last month
- Detecting genome structural variants with deep learning in single molecule sequencing☆101Updated 7 months ago
- Evaluation and polishing workflows for T2T genome assemblies☆105Updated last month
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆70Updated last month
- Same species annotation lift over pipeline.☆96Updated last year