HKU-BAL / ClairSLinks
ClairS - a deep-learning method for long-read somatic small variant calling
☆102Updated last month
Alternatives and similar repositories for ClairS
Users that are interested in ClairS are comparing it to the libraries listed below
Sorting:
- Variant calling tool for long-read sequencing data☆116Updated 10 months ago
- SV detection tool for nanopore sequence reads☆97Updated 2 weeks ago
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆77Updated 2 months ago
- Research release basecalling models and configurations☆117Updated 8 months ago
- Quality control tools for nanopore sequencing data☆111Updated last year
- A tool for somatic structural variant calling using long reads☆160Updated 3 months ago
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- A complete diploid human genome☆140Updated 3 months ago
- cDNA read preprocessing☆83Updated last year
- Tandem repeat expansion detection or genotyping from long-read alignments☆140Updated last month
- Evaluation and polishing workflows for T2T genome assemblies☆145Updated 6 months ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆131Updated last month
- A tool to identify, orient, trim and rescue full length cDNA reads☆83Updated 3 years ago
- Visualise and analyse nanopore (ONT) raw signals☆126Updated last month
- ☆52Updated 3 months ago
- ☆126Updated 2 years ago
- Somatic structural variant caller for long-read data☆87Updated 2 months ago
- RNA modifications detection from Nanopore dRNA-Seq data☆88Updated last week
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆82Updated this week
- Wally: Visualization of aligned sequencing reads and contigs☆120Updated 3 months ago
- Toolkit for calling structural variants using short or long reads☆115Updated last week
- A *fast* tool for BAM/CRAM quality evaluation, intended for long reads☆164Updated last week
- Fast and accurate coordinate conversion between assemblies☆118Updated 3 months ago
- Dfam Transposable Element Tools Docker container.☆101Updated last month
- Methylation Phasing for Nanopore Sequencing☆49Updated 2 years ago
- Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing☆59Updated last year
- ☆83Updated last year
- Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.☆103Updated 2 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 8 months ago
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆227Updated last week