google / deepsomaticLinks
DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal and tumor-only sequencing data.
☆287Updated 3 months ago
Alternatives and similar repositories for deepsomatic
Users that are interested in deepsomatic are comparing it to the libraries listed below
Sorting:
- RNA-seq prediction with deep convolutional neural networks.☆220Updated 4 months ago
- DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) …☆254Updated 10 months ago
- DRAGEN open-source mapper☆183Updated 2 years ago
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆200Updated this week
- A structural variation pipeline for short-read sequencing☆200Updated last week
- Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.☆232Updated 2 months ago
- Download FASTQ files from SRA or ENA repositories.☆362Updated 2 weeks ago
- Tool for plotting sequencing data along genomic coordinates.☆335Updated last month
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆314Updated 2 weeks ago
- Biological sequence analysis for the modern age.☆261Updated last week
- ☆166Updated last week
- Nextflow training material☆210Updated this week
- A curated list of awesome nanopore analysis tools.☆305Updated 6 months ago
- Pangolin is a deep-learning method for predicting splice site strengths.☆84Updated last year
- SUPPA: Fast quantification of splicing and differential splicing☆292Updated 2 months ago
- Precision HLA typing from next-generation sequencing data☆205Updated last year
- Python Fundamentals for Biologists☆39Updated last year
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆106Updated 7 months ago
- Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/☆290Updated 7 months ago
- coding exercise using TCGA immune infiltration data☆46Updated last year
- genes and genomes at your fingertips☆405Updated 3 months ago
- Example genomics data for tool developers☆117Updated last year
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆202Updated 3 weeks ago
- ClinVar aggregates information about genomic variation and its relationship to human health. Contact us at 'clinvar@ncbi.nlm.nih.gov…☆82Updated last week
- Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments☆331Updated this week
- IGV Web App☆127Updated last week
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆230Updated 6 months ago
- minimal example implementations for bioinformatics workflow managers☆279Updated 4 years ago
- Annotation and Ranking of Structural Variation☆284Updated 3 months ago
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark/bwa-meth + MethylDackel or bwa-mem + rastair☆185Updated 2 weeks ago