Alternatives and similar repositories for deepsomatic

Users that are interested in deepsomatic are comparing it to the libraries listed below

• CompEpigen / figeno
  Tool for plotting sequencing data along genomic coordinates.
  ☆297Updated last month
• htseq / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆105Updated 2 months ago
• broadinstitute / gatk-sv
  A structural variation pipeline for short-read sequencing
  ☆191Updated this week
• BioOmics / iSeq
  Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.
  ☆205Updated 2 weeks ago
• ablab / IsoQuant
  Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
  ☆175Updated last week
• nf-core / fetchngs
  Pipeline to fetch metadata and raw FastQ files from public databases
  ☆178Updated 2 weeks ago
• griffithlab / pVACtools
  ☆157Updated 3 weeks ago
• sbslee / pypgx
  A Python package for pharmacogenomics (PGx) research
  ☆75Updated 5 months ago
• nf-core / methylseq
  Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
  ☆169Updated this week
• rpetit3 / fastq-dl
  Download FASTQ files from SRA or ENA repositories.
  ☆339Updated last month
• GoekeLab / bambu
  Reference-guided transcript discovery and quantification for long read RNA-Seq data
  ☆215Updated last week
• Illumina / DRAGMAP
  DRAGEN open-source mapper
  ☆176Updated last year
• deeptools / HiCExplorer
  HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
  ☆253Updated 3 weeks ago
• google / deepconsensus
  DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) …
  ☆241Updated 4 months ago
• bioinform / somaticseq
  An ensemble approach to accurately detect somatic mutations using SomaticSeq
  ☆197Updated 3 weeks ago
• rajewsky-lab / mirdeep2
  Discovering known and novel miRNAs from small RNA sequencing data
  ☆152Updated 11 months ago
• nextflow-io / training
  Nextflow training material
  ☆186Updated this week
• vanheeringen-lab / genomepy
  genes and genomes at your fingertips
  ☆395Updated 2 months ago
• nf-core / nanoseq
  Nanopore demultiplexing, QC and alignment pipeline
  ☆207Updated last month
• tkzeng / Pangolin
  Pangolin is a deep-learning method for predicting splice site strengths.
  ☆76Updated last year
• Ensembl / VEP_plugins
  Plugins for the Ensembl Variant Effect Predictor (VEP)
  ☆154Updated 3 weeks ago
• suhrig / arriba
  Fast and accurate gene fusion detection from RNA-Seq data
  ☆245Updated last week
• ConesaLab / SQANTI3
  Tool for the Quality Control of Long-Read Defined Transcriptomes
  ☆234Updated this week
• GoekeLab / m6anet
  Detection of m6A from direct RNA-Seq data
  ☆127Updated 2 months ago
• GuyTeichman / RNAlysis
  Analyze your RNA sequencing data without writing a single line of code
  ☆137Updated 2 months ago
• GoekeLab / bioinformatics-workflows
  minimal example implementations for bioinformatics workflow managers
  ☆278Updated 3 years ago
• gagneurlab / drop
  Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders
  ☆151Updated last week
• pcingola / SnpEff
  ☆284Updated 5 months ago
• lgmgeo / AnnotSV
  Annotation and Ranking of Structural Variation
  ☆262Updated 3 weeks ago
• novoalab / EpiNano
  Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
  ☆115Updated last month