VanLoo-lab / ASCAT.scLinks
☆25Updated this week
Alternatives and similar repositories for ASCAT.sc
Users that are interested in ASCAT.sc are comparing it to the libraries listed below
Sorting:
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆64Updated 3 weeks ago
- T1K is a versatile methods to genotype highly polymorphic genes (e.g. KIR, HLA) with bulk or single-cell RNA-seq, WGS or WES data.☆98Updated last month
- Irons out wrinkles in noisy coverage data using robust PCA☆15Updated 8 months ago
- Full-length transcriptome splicing and mutation analysis☆86Updated last year
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- ☆75Updated 2 years ago
- Battenberg R package for subclonal copynumber estimation☆95Updated 2 months ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆32Updated 2 years ago
- An R package to time somatic mutations☆65Updated 5 years ago
- SigProfilerPlotting provides a standard tool for displaying all types of mutational signatures as well as all types of mutational pattern…☆52Updated this week
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72Updated last year
- ☆22Updated 2 months ago
- ☆39Updated 4 years ago
- cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis☆40Updated 3 weeks ago
- QDNAseq package for Bioconductor☆54Updated last year
- ENCODE whole-genome bisulfite sequencing (WGBS) pipeline☆32Updated 3 years ago
- Tools for extracting read counts and gc and mappability statistics in preparation for running HMMCopy.☆44Updated 4 years ago
- Tumor Mutational Burden☆64Updated last week
- ☆13Updated 8 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated 3 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- Tools for analyzing DNA methylation data☆44Updated last month
- An R package for predicting HR deficiency from mutation contexts☆30Updated 11 months ago
- Somatic copy variant caller (CNV) for next generation sequencing☆75Updated last year
- A tool for the calculation of RNA-editing index for RNA seq data☆45Updated last month
- Single cell Nanopore sequencing data for Genotype and Phenotype☆57Updated 8 months ago
- ENCODE long read RNA-seq pipeline☆51Updated 3 years ago
- SingleCell Nanopore sequencing data analysis☆63Updated 8 months ago
- ☆38Updated 5 years ago
- MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.☆59Updated 10 months ago