Cluster single cells and analyze cell clade relationships with colorful visualizations.
☆115Oct 28, 2024Updated last year
Alternatives and similar repositories for too-many-cells
Users that are interested in too-many-cells are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆27Mar 3, 2020Updated 6 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆46Jul 23, 2021Updated 4 years ago
- NicheNet: predict active ligand-target links between interacting cells☆637Nov 12, 2025Updated 5 months ago
- ☆72Apr 17, 2024Updated 2 years ago
- Spatial RNA velocity☆10Oct 3, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Consistent Clusters for scRNA-seq☆11Oct 6, 2021Updated 4 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆31Aug 8, 2023Updated 2 years ago
- Reference mapping for single-cell genomics☆402Mar 21, 2026Updated 3 weeks ago
- ChromSCape☆14Jul 30, 2025Updated 8 months ago
- Clone identification from single-cell data☆63Nov 10, 2022Updated 3 years ago
- R package for integrating and analyzing multiple single-cell datasets☆427Feb 4, 2026Updated 2 months ago
- A Bayesian model for compositional single-cell data analysis☆196Jan 13, 2026Updated 3 months ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆213Jan 9, 2023Updated 3 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Apr 19, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆59Mar 18, 2026Updated last month
- Code used to run the data analysis in the hdWGCNA manuscript (Morabito et al 2022)☆18Jul 14, 2023Updated 2 years ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆308Mar 6, 2023Updated 3 years ago
- Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕☆185Jun 24, 2021Updated 4 years ago
- CellRank: dynamics from multi-view single-cell data☆439Apr 6, 2026Updated last week
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Mar 30, 2024Updated 2 years ago
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Aug 9, 2022Updated 3 years ago
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆145Apr 5, 2024Updated 2 years ago
- R package for pathway analysis in scRNA-seq data☆79Aug 17, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- R package to visualize gene expression data based on weighted kernel density estimation☆112Feb 6, 2026Updated 2 months ago
- Inferring CNV from Single-Cell RNA-Seq☆662Nov 14, 2025Updated 5 months ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Jan 14, 2024Updated 2 years ago
- Discovering novel cell types across heterogenous single-cell experiments☆123Dec 8, 2022Updated 3 years ago
- Analysis Pipeline for Single Cell ATAC-seq☆322Apr 27, 2023Updated 2 years ago
- A Shiny web app for mapping datasets using Seurat v4☆144Nov 5, 2024Updated last year
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆240May 23, 2020Updated 5 years ago
- Cell-cell communication and lineage inference for scRNA-seq data☆25May 3, 2023Updated 2 years ago
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆10Mar 13, 2021Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets☆107Aug 2, 2023Updated 2 years ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆26Jan 11, 2023Updated 3 years ago
- R package for detecting doublets in single-cell RNA sequencing data☆540Mar 21, 2025Updated last year
- Batch balanced KNN☆179Oct 11, 2023Updated 2 years ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11Mar 31, 2026Updated 2 weeks ago
- Haplotype-aware CNV analysis from single-cell RNA-seq, ATAC-seq, and multiome☆212Feb 4, 2026Updated 2 months ago
- RNA Velocity generalized through dynamical modeling☆496Feb 25, 2026Updated last month