GregorySchwartz / too-many-cellsLinks
Cluster single cells and analyze cell clade relationships with colorful visualizations.
☆112Updated 8 months ago
Alternatives and similar repositories for too-many-cells
Users that are interested in too-many-cells are comparing it to the libraries listed below
Sorting:
- Detect doublets in single-cell RNA-seq data☆85Updated 5 years ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆88Updated last year
- marker-based purification of cell types from single-cell RNA-seq datasets☆112Updated 2 months ago
- Tools for single-cell data processing☆125Updated last year
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated 2 months ago
- Single Cell Cluster Evaluation☆94Updated 3 years ago
- Single-Cell Clustering Assessment Framework☆102Updated last year
- A docker image for single-cell analysis☆88Updated 4 months ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆82Updated last year
- R package for Pathway RespOnsive GENe activity inference☆106Updated 2 years ago
- Significance analysis for clustering single-cell RNA-sequencing data☆116Updated 9 months ago
- Publication Page for Satpathy*, Granja* et al 2019☆94Updated 5 years ago
- Clonotype Neighbor Graph Analysis☆89Updated last week
- ☆69Updated last year
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆140Updated last year
- Efficient and precise single-cell reference atlas mapping with Symphony☆105Updated 2 years ago
- R script for the covid balf data analysis☆65Updated 4 years ago
- scDIOR: Single cell data IO softwaRe☆141Updated 3 years ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆73Updated 5 years ago
- A Shiny web app for mapping datasets using Seurat v4☆130Updated 7 months ago
- A Bayesian model for compositional single-cell data analysis☆165Updated 2 years ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆107Updated 2 months ago
- ☆68Updated last year
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- SCSA: cell type annotation for single-cell RNA-seq data☆90Updated 2 years ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆62Updated 3 years ago
- R package to access DoRothEA's regulons☆149Updated last year
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆90Updated 5 years ago
- ☆130Updated last year
- ☆46Updated 3 years ago