Alternatives and similar repositories for too-many-cells

Users that are interested in too-many-cells are comparing it to the libraries listed below

• tgen / banovichlab
  Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).
  ☆48Updated last year
• supatt-lab / SingCellaR
  an integrative analysis tool for analysing large-scale single cell RNA-sequencing data
  ☆36Updated 2 years ago
• wmacnair / psupertime
  psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels
  ☆45Updated 3 years ago
• califano-lab / single-cell-pipeline
  ☆50Updated 6 years ago
• edsgard / trendsceek
  Identify genes with spatial expression trends in single-cell gene expression data
  ☆51Updated 7 years ago
• jlaffy / infercna
  Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data
  ☆46Updated 2 years ago
• KlugerLab / DAseq
  ☆41Updated 4 years ago
• cansysbio / ConsensusTME
  ConsensusTME Gene Sets and R Script
  ☆39Updated last year
• Teichlab / cellity
  ☆37Updated 9 years ago
• shenorrLabTRDF / cellAlign
  ☆43Updated 5 years ago
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆75Updated 5 years ago
• MarioniLab / scran
  Clone of the Bioconductor repository for the scran package.
  ☆46Updated last year
• cssmillie / ulcerative_colitis
  ☆63Updated 5 years ago
• bioinfoDZ / RISC
  A R package for integrated scRNA-seq data analysis using the RPCI algorithm
  ☆44Updated last year
• prabhakarlab / RCAv2
  R package for robust clustering of single cell RNA sequencing data
  ☆36Updated last year
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆92Updated last month
• meichendong / SCDC
  SCDC
  ☆46Updated 7 months ago
• Coolgenome / iTALK
  ☆65Updated 6 years ago
• rikenbit / scTensor
  R package for detection of cell-cell interaction using Non-negative Tensor Decomposition
  ☆34Updated 7 months ago
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆97Updated 8 months ago
• Single-Cell-Genomics-Group-CNAG-CRG / Tumor-Immune-Cell-Atlas
  Code repository for the Tumor Immune Cell Atlas (TICA) project
  ☆63Updated 3 years ago
• ZJUFanLab / CellTalkDB
  A manually curated database of literature-supported ligand-receptor interactions in human and mouse
  ☆32Updated last year
• kharchenkolab / cacoa
  Single-cell Case Control Analysis
  ☆52Updated this week
• jdekanter / CHETAH
  scRNA-seq cell type identification
  ☆44Updated 6 years ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 3 years ago
• Oshlack / speckle
  R package for specialised analysis of single cell data
  ☆40Updated 3 years ago
• niaid / dsb
  Normalize CITEseq Data
  ☆67Updated 2 months ago
• RausellLab / CelliD
  Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.
  ☆95Updated 2 years ago
• cozygene / bisque
  An R toolkit for estimation of cell composition from bulk expression data
  ☆81Updated 7 months ago
• arc85 / celltalker
  Inference of cell-cell communication from single-cell RNAseq data
  ☆49Updated 9 months ago