sandhya212 / BISCUIT_SingleCell_IMM_ICML_2016
R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.
☆65Updated 6 years ago
Alternatives and similar repositories for BISCUIT_SingleCell_IMM_ICML_2016:
Users that are interested in BISCUIT_SingleCell_IMM_ICML_2016 are comparing it to the libraries listed below
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 6 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆92Updated 4 years ago
- An R-based interface for loom files☆66Updated 4 years ago
- Normalize CITEseq Data☆64Updated 7 months ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 3 years ago
- ☆53Updated 4 years ago
- supporting code for the multinomial single cell RNA-Seq paper☆51Updated 4 years ago
- ☆56Updated 4 months ago
- A tool that allows to get UMI counts from a single cell protein assay☆79Updated 5 months ago
- R package for robust clustering of single cell RNA sequencing data☆38Updated last year
- Multi-sample Unified Discriminant ANalysis☆72Updated last year
- Clone of the Bioconductor repository for the scran package.☆40Updated 4 months ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 5 years ago
- ☆53Updated 3 months ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆44Updated 8 years ago
- Material for lecture at the EMBL Single Cell Course 2016☆47Updated 8 years ago
- Clone identification from single-cell data☆60Updated 2 years ago
- Algorithm for the inference of cell types and lineage trees from single-cell RNA-seq data.☆42Updated 7 years ago
- An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.☆64Updated 7 years ago
- scRNA-seq cell type identification☆44Updated 5 years ago
- ☆59Updated 4 years ago
- consistent quantification of external RNA-seq data sets☆58Updated last year
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆42Updated 4 years ago
- An R interface to enrichR☆80Updated last month
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆74Updated last year
- A tool for removing doublets from single-cell RNA-seq data☆70Updated 4 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 3 years ago
- ☆47Updated 2 years ago
- ☆33Updated 5 years ago
- epigenome analysis to rank transcription factors☆30Updated last year