Alternatives and similar repositories for BISCUIT_SingleCell_IMM_ICML_2016

Users that are interested in BISCUIT_SingleCell_IMM_ICML_2016 are comparing it to the libraries listed below

• slowkow / tftargets
  Human transcription factor target genes from 6 databases in convenient R format.
  ☆86Updated 6 years ago
• davismcc / archive-scater
  An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.
  ☆64Updated 7 years ago
• hemberg-lab / scmap
  A tool for unsupervised projection of single cell RNA-seq data
  ☆95Updated 4 years ago
• YosefLab / scone
  ☆53Updated 2 months ago
• JEFworks / MUDAN
  Multi-sample Unified Discriminant ANalysis
  ☆73Updated 2 years ago
• ggjlab / scMCA
  Mouse cell atlas
  ☆59Updated 5 years ago
• GIS-SP-Group / RCA
  R package for robust clustering of single cell RNA sequencing data
  ☆39Updated last year
• AllonKleinLab / SPRING
  ☆68Updated 7 years ago
• mojaveazure / loomR
  An R-based interface for loom files
  ☆66Updated 4 years ago
• maggiecrow / MetaNeighbor
  ☆50Updated 7 years ago
• ambrosejcarr / seqc
  Single-Cell Sequencing Quality Control and Processing Software
  ☆30Updated 5 years ago
• Hoohm / CITE-seq-Count
  A tool that allows to get UMI counts from a single cell protein assay
  ☆82Updated 3 weeks ago
• niaid / dsb
  Normalize CITEseq Data
  ☆65Updated last month
• willtownes / scrna2019
  supporting code for the multinomial single cell RNA-Seq paper
  ☆51Updated 4 years ago
• BaderLab / scClustViz
  Explore and share your scRNAseq clustering results
  ☆50Updated last year
• jdekanter / CHETAH
  scRNA-seq cell type identification
  ☆44Updated 5 years ago
• MarioniLab / scran
  Clone of the Bioconductor repository for the scran package.
  ☆41Updated 8 months ago
• shenorrLabTRDF / cellAlign
  ☆41Updated 4 years ago
• dgrun / RaceID
  Algorithm for the inference of cell types from single-cell RNA-seq data.
  ☆44Updated 9 years ago
• sansomlab / tenx
  Pipelines for the analysis of 10x single-cell RNA-sequencing data
  ☆57Updated last year
• Teichlab / cellity
  ☆37Updated 8 years ago
• lanjiangboston / GiniClust
  GiniClust: Detecting Rare Cell Types from Single-Cell Gene Expression Data with Gini Index
  ☆36Updated 6 years ago
• gillislab / MetaNeighbor
  A method to rapidly assess cell type identity using both functional and random gene sets
  ☆39Updated 4 months ago
• Teichlab / embl-single-cell-course-2016
  Material for lecture at the EMBL Single Cell Course 2016
  ☆47Updated 9 years ago
• jon-xu / scSplit
  Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…
  ☆41Updated 2 years ago
• elimereu / matchSCore2
  ☆55Updated 4 years ago
• rhondabacher / SCnorm
  Normalization for single cell RNA-seq data
  ☆47Updated last year
• faryabib / too-many-cells
  Cluster single cells and analyze cell clade relationships with colorful visualizations.
  ☆45Updated 3 years ago
• dynverse / dynverse
  A set of tools supporting the development, execution, and benchmarking of trajectory inference methods. 🌍
  ☆75Updated 3 years ago
• Neurosurgery-Brain-Tumor-Center-DiazLab / CONICS
  CONICS: COpy-Number analysis In single-Cell RNA-Sequencing
  ☆75Updated 2 years ago