sandhya212 / BISCUIT_SingleCell_IMM_ICML_2016Links
R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.
☆66Updated 7 years ago
Alternatives and similar repositories for BISCUIT_SingleCell_IMM_ICML_2016
Users that are interested in BISCUIT_SingleCell_IMM_ICML_2016 are comparing it to the libraries listed below
Sorting:
- ☆37Updated 9 years ago
- An R-based interface for loom files☆67Updated 5 years ago
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 6 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 6 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- Normalize CITEseq Data☆66Updated 5 months ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆45Updated 9 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- Multi-sample Unified Discriminant ANalysis☆74Updated 2 years ago
- consistent quantification of external RNA-seq data sets☆58Updated last year
- Clone of the Bioconductor repository for the scran package.☆43Updated last year
- An R toolkit for estimation of cell composition from bulk expression data☆78Updated 3 months ago
- ☆55Updated 6 months ago
- An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.☆64Updated 8 years ago
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆105Updated 2 years ago
- An R interface to enrichR☆92Updated 7 months ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆45Updated 4 years ago
- R package for robust clustering of single cell RNA sequencing data☆40Updated 2 years ago
- ☆42Updated 4 years ago
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆48Updated 6 months ago
- A set of tools supporting the development, execution, and benchmarking of trajectory inference methods. 🌍☆76Updated 4 years ago
- Linseed: LINear Subspace identification for gene Expresion Deconvolution☆31Updated 3 weeks ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆84Updated 2 years ago
- supporting code for the multinomial single cell RNA-Seq paper☆52Updated 4 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- ☆55Updated 4 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated 11 months ago
- An R/Bioconductor package that implements a single-sample molecular phenotyping approach☆45Updated 9 months ago
- ☆69Updated 7 years ago
- Rphenograph: R implementation of the PhenoGraph algorithm☆48Updated 5 years ago