sandhya212 / BISCUIT_SingleCell_IMM_ICML_2016Links
R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.
☆66Updated 7 years ago
Alternatives and similar repositories for BISCUIT_SingleCell_IMM_ICML_2016
Users that are interested in BISCUIT_SingleCell_IMM_ICML_2016 are comparing it to the libraries listed below
Sorting:
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 7 years ago
- An R-based interface for loom files☆67Updated 5 years ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆46Updated 9 years ago
- Normalize CITEseq Data☆66Updated last month
- consistent quantification of external RNA-seq data sets☆58Updated 2 years ago
- Multi-sample Unified Discriminant ANalysis☆74Updated 2 years ago
- ☆37Updated 9 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 5 years ago
- Clone of the Bioconductor repository for the scran package.☆46Updated last year
- ☆55Updated 10 months ago
- R package to identify genes with differential distributions in single-cell RNA-seq☆33Updated 3 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆44Updated 5 years ago
- R package for robust clustering of single cell RNA sequencing data☆40Updated 2 years ago
- An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.☆64Updated 8 years ago
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆108Updated 3 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 6 years ago
- An R interface to enrichR☆93Updated 10 months ago
- ☆69Updated 7 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- ☆55Updated 5 years ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆95Updated 3 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆86Updated 3 weeks ago
- ☆34Updated 6 years ago
- ☆59Updated last year
- Rphenograph: R implementation of the PhenoGraph algorithm☆50Updated 5 years ago
- An R toolkit for estimation of cell composition from bulk expression data☆80Updated 6 months ago
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆107Updated 2 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data☆99Updated 4 years ago
- Mouse cell atlas☆61Updated 5 years ago