Detection of super-enhancers in cancer data
☆21Apr 10, 2023Updated 3 years ago
Alternatives and similar repositories for LILY
Users that are interested in LILY are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RIESLING: Super-enhancer identification. (Rapid Identification of EnhancerS LInked to Nearby Genes)☆10Jun 28, 2018Updated 8 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆18Aug 12, 2022Updated 3 years ago
- scripts for analyzing the CVDC data.☆20Dec 5, 2019Updated 6 years ago
- RNA-seq analysis scripts☆18Jan 8, 2026Updated 6 months ago
- ☆15Oct 7, 2019Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- CRCmapper: map core regulatory circuitry☆14Nov 23, 2020Updated 5 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Nov 26, 2025Updated 7 months ago
- Interface to 10x Genomics' 1.3 m single cell data set☆19Aug 2, 2018Updated 7 years ago
- Detecting cancer subtypes with machine learning.☆10Feb 5, 2020Updated 6 years ago
- Code for TAD_SV project☆11Mar 16, 2022Updated 4 years ago
- ☆10Jan 8, 2018Updated 8 years ago
- R package to do enrichment analysis for neoantigens☆13Feb 21, 2022Updated 4 years ago
- Consistent Clusters for scRNA-seq☆11Oct 6, 2021Updated 4 years ago
- bradner lab computation pipeline scripts☆54Aug 22, 2025Updated 10 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources☆34Oct 27, 2021Updated 4 years ago
- ☆16Apr 29, 2020Updated 6 years ago
- XEnograft Visualization & Analysis☆11Oct 18, 2025Updated 9 months ago
- ☆12Dec 15, 2020Updated 5 years ago
- ☆12May 4, 2021Updated 5 years ago
- Human transcription factor target genes from 6 databases in convenient R format.☆87Oct 4, 2018Updated 7 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆22Dec 14, 2021Updated 4 years ago
- A collection of scripts used to recreate files and graphs used in the MMRF CoMMpass analysis.☆24Nov 23, 2025Updated 7 months ago
- An evolutionary Algorithm for the Identification and Study of Prognostic Gene Expression Signatures in Cancer (Bioconductor)☆15Oct 24, 2020Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- HiCDCPlus☆19Jun 6, 2022Updated 4 years ago
- Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/☆13May 17, 2021Updated 5 years ago
- Toolbox package for organizing and working with TCGA data☆31Jul 2, 2026Updated 2 weeks ago
- ClusterMap is an R package to analyze and compare two or more single cell expression datasets.☆21Jan 17, 2023Updated 3 years ago
- Molecular Signatures Database (MSigDB) in a data frame☆16Dec 3, 2018Updated 7 years ago
- ATAC-seq processing pipeline☆34Apr 8, 2022Updated 4 years ago
- Simulation tool for ChIP- and other -seq experiments☆14Mar 13, 2023Updated 3 years ago
- An analysis of Arabidopsis RNA-seq data (hy5 mutant and wt, two replicates each; SRA accession SRX029582)☆14Jul 3, 2012Updated 14 years ago
- Z Hu et al. The repertoire of serous ovarian cancer non-genetic heterogeneity revealed by single-cell sequencing of normal fallopian tube…☆13Nov 22, 2020Updated 5 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Multi-omics disease sub-type specific drug repositioning aided with expression signatures from ConnectivityMap☆19Mar 7, 2020Updated 6 years ago
- single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.☆21Jan 22, 2026Updated 5 months ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Feb 17, 2021Updated 5 years ago
- A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries☆16Jan 27, 2020Updated 6 years ago
- mitochondrial variant analysis tools☆15Mar 4, 2021Updated 5 years ago
- Explore the cancer relevance of your gene list☆54May 31, 2026Updated last month
- ☆17May 30, 2022Updated 4 years ago