☆71Apr 17, 2024Updated last year
Alternatives and similar repositories for SPRING_dev
Users that are interested in SPRING_dev are comparing it to the libraries listed below
Sorting:
- ☆69May 2, 2018Updated 7 years ago
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Jul 1, 2020Updated 5 years ago
- Descriptive probabilistic marker gene approach to single-cell pseudotime inference☆30Nov 29, 2019Updated 6 years ago
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆237May 23, 2020Updated 5 years ago
- analysis script for GBM single cell RNA seq data☆22May 26, 2021Updated 4 years ago
- Inference of switch-like differential expression along single-cell trajectories☆22Oct 24, 2017Updated 8 years ago
- Computational identification of targets for CAR-T cell therapy in AML☆21Dec 25, 2022Updated 3 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆39Jan 9, 2025Updated last year
- Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets☆107Aug 2, 2023Updated 2 years ago
- RNA velocity estimation in R☆195Sep 14, 2023Updated 2 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆115Oct 28, 2024Updated last year
- Single cell trajectory detection☆298Feb 14, 2026Updated last month
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆479Apr 5, 2024Updated last year
- Code for the empty droplet and cell detection project from the HCA Hackathon.☆21Feb 26, 2019Updated 7 years ago
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆246Mar 8, 2026Updated last week
- Assembles a graph manifold from time series single-cell RNAseq data☆18May 11, 2021Updated 4 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆26Mar 3, 2020Updated 6 years ago
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆16Feb 25, 2019Updated 7 years ago
- AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-…☆106Jul 7, 2022Updated 3 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Sep 24, 2018Updated 7 years ago
- Code to go along with Velasco et. al.☆11Jun 5, 2019Updated 6 years ago
- Interface to 10x Genomics' 1.3 m single cell data set☆18Aug 2, 2018Updated 7 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Sep 1, 2023Updated 2 years ago
- Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"☆24Dec 20, 2018Updated 7 years ago
- A Bayesian model for compositional single-cell data analysis☆191Jan 13, 2026Updated 2 months ago
- Signature Analysis and Visualization for Single-Cell RNA-seq☆175Jun 10, 2024Updated last year
- Pipeline for processing inDrops sequencing data☆75Oct 26, 2018Updated 7 years ago
- An implementation of MNN (Mutual Nearest Neighbors) correct in python.☆77Jan 9, 2023Updated 3 years ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆17Nov 20, 2018Updated 7 years ago
- ☆39Aug 4, 2021Updated 4 years ago
- ☆13May 14, 2019Updated 6 years ago
- Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it …☆22Feb 14, 2023Updated 3 years ago
- Reusable scripts and functions archive for the paper "Organoid single-cell genomic atlas uncovers human-specific features of brain develo…☆38Aug 2, 2021Updated 4 years ago
- ☆10Feb 12, 2019Updated 7 years ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆317Nov 1, 2022Updated 3 years ago
- Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data☆11Jul 11, 2024Updated last year
- Lightweight Iterative Gene set Enrichment in R☆59Oct 3, 2024Updated last year
- ☆88Apr 5, 2021Updated 4 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Dec 14, 2021Updated 4 years ago