AllonKleinLab / SPRING_devLinks
☆70Updated last year
Alternatives and similar repositories for SPRING_dev
Users that are interested in SPRING_dev are comparing it to the libraries listed below
Sorting:
- Single-Cell Clustering Assessment Framework☆105Updated last year
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆39Updated 8 months ago
- ☆69Updated 7 years ago
- ☆73Updated 2 years ago
- ☆63Updated 5 years ago
- R package for Pathway RespOnsive GENe activity inference☆108Updated 2 years ago
- Single Cell Cluster Evaluation☆97Updated 4 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- Mouse cell atlas☆61Updated 5 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆85Updated 5 months ago
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆84Updated 4 years ago
- R implementation of MULTI-seq sample classification workflow☆64Updated last year
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆92Updated 3 years ago
- Analysis of cell-cell communication at single-cell resolution☆104Updated last year
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- ☆56Updated 7 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆97Updated 2 years ago
- Doublet detection in single-cell RNA-seq data.☆93Updated 7 months ago
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆58Updated 2 years ago
- A docker image for single-cell analysis☆90Updated last week
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆113Updated 11 months ago
- Detect doublets in single-cell RNA-seq data☆86Updated 6 years ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆110Updated 2 years ago
- scWGCNA☆61Updated 2 years ago
- ☆62Updated 6 years ago
- Create cisTarget databases☆53Updated 3 months ago