AllonKleinLab / SPRING_devLinks
☆71Updated last year
Alternatives and similar repositories for SPRING_dev
Users that are interested in SPRING_dev are comparing it to the libraries listed below
Sorting:
- ☆69Updated 7 years ago
- Single-Cell Clustering Assessment Framework☆107Updated 2 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 6 years ago
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆95Updated 3 years ago
- Mouse cell atlas☆61Updated 5 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆39Updated last year
- R implementation of MULTI-seq sample classification workflow☆65Updated 2 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 5 years ago
- R package for Pathway RespOnsive GENe activity inference☆114Updated 3 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- Detect doublets in single-cell RNA-seq data☆86Updated 6 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- ☆63Updated 5 years ago
- Clone of the Bioconductor repository for the scran package.☆46Updated last year
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆86Updated 2 months ago
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆84Updated 4 years ago
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆66Updated 5 months ago
- Homepage: https://miaozhun.github.io/DEsingle. Bioconductor page: https://bioconductor.org/packages/DEsingle.☆32Updated 3 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆87Updated 9 months ago
- Single Cell Cluster Evaluation☆99Updated 4 years ago
- Doublet detection in single-cell RNA-seq data.☆97Updated 11 months ago
- R package to access DoRothEA's regulons☆154Updated last year
- A repo with random short code snippets☆41Updated 6 years ago
- Bostongene cell deconvolution algorithm from RNAseq☆60Updated 2 years ago
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆73Updated 7 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆114Updated last year
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆104Updated last month
- A repository of pipelines for single-cell data in Nextflow DSL2☆80Updated 2 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 5 years ago
- ☆74Updated 2 years ago