AllonKleinLab / SPRING_devLinks
☆70Updated last year
Alternatives and similar repositories for SPRING_dev
Users that are interested in SPRING_dev are comparing it to the libraries listed below
Sorting:
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- Single-Cell Clustering Assessment Framework☆105Updated last year
- ☆69Updated 7 years ago
- R implementation of MULTI-seq sample classification workflow☆64Updated last year
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆92Updated 3 years ago
- Mouse cell atlas☆61Updated 5 years ago
- Doublet detection in single-cell RNA-seq data.☆92Updated 7 months ago
- R package for Pathway RespOnsive GENe activity inference☆108Updated 2 years ago
- ☆63Updated 4 years ago
- Homepage: https://miaozhun.github.io/DEsingle. Bioconductor page: https://bioconductor.org/packages/DEsingle.☆31Updated 2 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆39Updated 8 months ago
- ☆55Updated 7 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated 4 months ago
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- Detect doublets in single-cell RNA-seq data☆85Updated 6 years ago
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆65Updated 2 weeks ago
- ☆59Updated last year
- Scanpy use cases.☆86Updated 5 years ago
- Single Cell Cluster Evaluation☆97Updated 4 years ago
- ☆71Updated 2 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆85Updated last year
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆84Updated 4 years ago
- A docker image for single-cell analysis☆89Updated 7 months ago
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆58Updated 2 years ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆92Updated last week
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆97Updated 2 years ago
- Create cisTarget databases☆53Updated 2 months ago
- scWGCNA☆61Updated 2 years ago
- R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…☆24Updated 2 years ago