ctlab / metacherchantView external linksLinks
☆19Jan 16, 2024Updated 2 years ago
Alternatives and similar repositories for metacherchant
Users that are interested in metacherchant are comparing it to the libraries listed below
Sorting:
- Fast metagenome analysis toolkit☆27Sep 3, 2024Updated last year
- A nextflow version of the Wochenende reference metagenome binning and visualization pipeline☆15Dec 14, 2024Updated last year
- Analysis pipeline for functional metagenomic sequencing data obtained using nanopore sequencing☆12Nov 20, 2016Updated 9 years ago
- Raspir, the rare species identifier☆11Oct 19, 2023Updated 2 years ago
- Real-time species-typing visualisation for nanopore data.☆13Apr 11, 2023Updated 2 years ago
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆16Jul 1, 2024Updated last year
- Dadaist2 🟨 Highway to R☆13Mar 7, 2025Updated 11 months ago
- ☆16May 22, 2023Updated 2 years ago
- Spaghetti: in situ analysis of 16S rRNA amplicons obtained by nanopore sequencing☆19Jul 26, 2024Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Jun 13, 2023Updated 2 years ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆18Apr 4, 2023Updated 2 years ago
- Standardized and Automated MetaBarcoding Analyses workflow (Mirror)☆13Jun 28, 2023Updated 2 years ago
- Strain resolver for metagenomics☆80Aug 2, 2024Updated last year
- TADA - Targeted Amplicon Diversity Analysis - a DADA2-focused Nextflow workflow for any targeted amplicon region☆22Dec 11, 2025Updated 2 months ago
- Fast approximation of similarity for sets of very different sizes☆20Mar 8, 2022Updated 3 years ago
- Strain Prediction and Analysis with Representative SEquence☆19Dec 8, 2024Updated last year
- Mapping-Assisted Targeted-Assembly for Metagenomics☆25Mar 28, 2025Updated 10 months ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Dec 11, 2020Updated 5 years ago
- Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.☆10Jan 6, 2023Updated 3 years ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- TAXnomic Profile Aggregation and STAndardisation☆41Nov 18, 2025Updated 2 months ago
- YAMP: Yet Another Metagenomic Pipeline☆62Jun 5, 2023Updated 2 years ago
- A Nextflow full-length 16S profiling pipeline for ONT reads☆25Nov 16, 2023Updated 2 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Mar 8, 2024Updated last year
- Code for design of diagnostic PCR primers, and metabarcoding markers.☆63Nov 7, 2023Updated 2 years ago
- viralComplete: BLAST-based viral completeness verification☆24Oct 4, 2021Updated 4 years ago
- A genomic minhashing implementation in Rust☆101Jun 17, 2025Updated 7 months ago
- Scripts for creating a Kraken database from the Comprehensive Antibiotic Resistance Database☆10Dec 16, 2016Updated 9 years ago
- MetaPORE – Chiu Laboratory, University of California, San Francisco☆12Nov 4, 2015Updated 10 years ago
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆12Jun 30, 2023Updated 2 years ago
- metagenome population recombination rate estimation pipeline☆12Nov 23, 2025Updated 2 months ago
- Tree Health and Plant Biosecurity Initiative - Phytophthora ITS1 Classifier Tool☆10Feb 2, 2026Updated last week
- A resistome profiler for Graphing Resistance Out Of meTagenomes☆65May 11, 2020Updated 5 years ago
- Metagenomic Analysis in Real Time☆29Nov 18, 2025Updated 2 months ago
- A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads☆67Nov 4, 2021Updated 4 years ago
- De novo Extraction of Strains from MetAgeNomes☆72Jun 17, 2020Updated 5 years ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 5 years ago
- Classify sequencing reads using MinHash.☆48Apr 6, 2020Updated 5 years ago
- Bacterial typing pipeline for clinical NGS data. Written in NextFlow, Python & Bash.☆12Feb 6, 2026Updated last week