ctlab / metacherchantLinks
☆18Updated last year
Alternatives and similar repositories for metacherchant
Users that are interested in metacherchant are comparing it to the libraries listed below
Sorting:
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Predict plasmids from uncorrected long read data☆40Updated 5 years ago
- Gene-flank analysis tool☆27Updated 6 months ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- Order and orientation of complete bacterial genomes☆28Updated last week
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆20Updated 6 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated 2 years ago
- Recombination-free trees☆58Updated 3 months ago
- Predict MLST directly from uncorrected long reads☆27Updated 3 years ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆25Updated 8 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated 2 years ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 3 years ago
- Long read metagenomics practical at EBAME18☆18Updated 6 years ago
- Calculate assocations between genes and traits☆23Updated 3 months ago
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 7 years ago
- Bacterial taxonomy construction and evaluation in R☆13Updated last year
- Mapping-Assisted Targeted-Assembly for Metagenomics☆21Updated 3 months ago
- Intra-species bacterial contamination detection☆25Updated 4 months ago
- viralFlye pipeline☆18Updated 10 months ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆38Updated 2 months ago
- Assembling the cause of phenotypes and genotypes from NGS data☆29Updated 5 years ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- A pipeline for bioinformatics analysis of bacterial genomes☆30Updated this week
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last week
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago