bioinfo-ut / PhenotypeSeekerLinks
Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains
☆19Updated 6 months ago
Alternatives and similar repositories for PhenotypeSeeker
Users that are interested in PhenotypeSeeker are comparing it to the libraries listed below
Sorting:
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated last year
- Detection of NCLDV signatures in 'omic data☆35Updated last year
- ☆42Updated last year
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- A toolkit for prokaryotic comparative genomics☆51Updated 2 weeks ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆39Updated 2 months ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- Strain Resolution ON Graphs☆48Updated 2 years ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆39Updated 3 years ago
- ☆53Updated 4 years ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Updated 2 years ago
- Analysing Metagenomic Species (MGS)☆42Updated 4 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆35Updated last month
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- ☆45Updated 2 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆46Updated 2 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆37Updated last year
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆30Updated last year
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆22Updated 2 years ago
- Gene-flank analysis tool☆33Updated 10 months ago
- MAG Circularization Method☆32Updated 3 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated 9 months ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆42Updated 3 weeks ago
- Bacterial GWAS analysis☆45Updated 3 months ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆21Updated 4 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Scalable creating/updating of metagenome profiling databases☆62Updated 4 months ago
- Discover and annotate the virome☆53Updated 2 weeks ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago