Alternatives and similar repositories for PhenotypeSeeker

Users that are interested in PhenotypeSeeker are comparing it to the libraries listed below

• yinlabniu / HGT-Finder

  View on GitHub
  Program for finding horizontal gene transfer using BLAST result
  ☆11May 26, 2023Updated 2 years ago
• jlugomar / longitudinal_microbiome_analysis_public

  View on GitHub
  ☆18Feb 19, 2021Updated 4 years ago
• JCVenterInstitute / PanGenomePipeline

  View on GitHub
  PanGenomePipeline
  ☆16Apr 10, 2024Updated last year
• aldro61 / kover

  View on GitHub
  Learn interpretable computational phenotyping models from k-merized genomic data
  ☆52Aug 9, 2022Updated 3 years ago
• LANL-Bioinformatics / GOTTCHA

  View on GitHub
  Accurate read-based metagenome characterization using a hierarchical suite of unique signatures. Please visit our homepage:
  ☆23Jan 29, 2019Updated 7 years ago
• HCBravoLab / metagenomeFeatures

  View on GitHub
  R package for annotating metagenomic datasets with taxonomic information
  ☆10Feb 11, 2020Updated 6 years ago
• InfectionMedicineProteomics / DPKS

  View on GitHub
  Data Processing Kitchen Sink for proteomics data
  ☆13Jan 13, 2026Updated last month
• shiraz-shah / VFCs

  View on GitHub
  Code for de novo discovery of viral families in virome data
  ☆16Jun 20, 2024Updated last year
• klebgenomics / Kleborate-viz

  View on GitHub
  Visualisation application for Klebsiella genotypes generated by Kleborate.
  ☆10Sep 27, 2025Updated 4 months ago
• simonerampelli / viromescan

  View on GitHub
  ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…
  ☆13Feb 13, 2023Updated 3 years ago
• viralInformatics / VIGA

  View on GitHub
  ☆15May 22, 2025Updated 8 months ago
• dieterich-lab / CircTest

  View on GitHub
  CircRNA testing and ploting R package
  ☆10Nov 23, 2020Updated 5 years ago
• neherlab / pan-genome-visualization

  View on GitHub
  Visualization of the pan-genome output by panX
  ☆66Jun 16, 2025Updated 7 months ago
• GunzIvan28 / rMAP

  View on GitHub
  Bacterial analysis toolbox for full ESKAPE pathogen characterization and profiling the resistome, mobilome, virulome & phylogenomics usin…
  ☆26Jan 30, 2025Updated last year
• CK7 / abawaca

  View on GitHub
  abawaca is a binning program for metagenomics
  ☆13May 20, 2017Updated 8 years ago
• kbaseattic / genome_annotation

  View on GitHub
  The genome annotation service provides automated gene annotation based on the RAST system. This deploys both client and service component…
  ☆11Sep 22, 2020Updated 5 years ago
• MG-RAST / MG-RAST

  View on GitHub
  The MG-RAST Backend -- the API server
  ☆46Apr 27, 2023Updated 2 years ago
• PATRIC3 / PATRIC-distribution

  View on GitHub
  For distributing patric related code
  ☆27Dec 19, 2022Updated 3 years ago
• biocore / greengenes2

  View on GitHub
  Processing support for Greengenes2
  ☆14Jul 31, 2023Updated 2 years ago
• ehsanasgari / MicroPheno

  View on GitHub
  MicroPheno Project
  ☆12Oct 21, 2022Updated 3 years ago
• jasonsahl / wgfast

  View on GitHub
  Whole genome focused array SNP typer
  ☆14Feb 2, 2026Updated 2 weeks ago
• Golob-Minot / geneshot

  View on GitHub
  ☆29Jun 12, 2024Updated last year
• rrwick / Bacterial-genome-assemblies-with-multiplex-MinION-sequencing

  View on GitHub
  ☆33Sep 20, 2017Updated 8 years ago
• biointec / jabba

  View on GitHub
  Read error correction tool for PacBio data
  ☆12Dec 11, 2024Updated last year
• liusihang / ViOTUcluster

  View on GitHub
  ViOTUcluster: A high-speed, all-in-one solution that streamlines the entire virome analysis workflow
  ☆20Jan 13, 2026Updated last month
• alexherbig / MultiVCFAnalyzer

  View on GitHub
  ☆15Jun 10, 2020Updated 5 years ago
• faylward / viralrecall

  View on GitHub
  Detection of NCLDV signatures in 'omic data
  ☆35Dec 28, 2025Updated last month
• ryanmelnyk / PyParanoid

  View on GitHub
  Rapid and scalable homolog identification for bacterial genomes
  ☆33Aug 27, 2019Updated 6 years ago
• AuReMe / emapper2gbk

  View on GitHub
  Convert GFF, fastas, annotation table and species name into Genbank.
  ☆17Jan 14, 2026Updated last month
• ZhenyanZhang / ARG-global

  View on GitHub
  Antibiotic resistance genes (ARGs) have accelerated microbial threats to human health during the last decade. Here we determined the risk…
  ☆19Apr 8, 2022Updated 3 years ago
• xiaolw95 / NetMoss

  View on GitHub
  ☆14May 7, 2022Updated 3 years ago
• hallamlab / metapathways2

  View on GitHub
  MetaPathways v2.0: A master-worker model for environmental Pathway/Genome Database construction on grids and clouds
  ☆33Nov 26, 2015Updated 10 years ago
• jcvi / METAREP

  View on GitHub
  METAREP: JCVI Metagenomics Reports - an open source tool for high-performance comparative metagenomics
  ☆26Mar 21, 2013Updated 12 years ago
• CristinaMoraru / VIRIDIC

  View on GitHub
  VIRIDIC (Virus Intergenomic Distance Calculator) computes pairwise intergenomic distances/similarities amongst viral genomes.
  ☆18Oct 19, 2023Updated 2 years ago
• BeatsonLab-MicrobialGenomics / micropipe

  View on GitHub
  A pipeline for high-quality bacterial genome construction using ONT sequencing
  ☆38Sep 22, 2022Updated 3 years ago
• rrwick / Core-SNP-filter

  View on GitHub
  a tool to filter sites in a FASTA-format whole-genome pseudo-alignment
  ☆65Jun 16, 2025Updated 7 months ago
• PATRIC3 / mic_prediction

  View on GitHub
  Code for doing MIC predictions on genomes
  ☆41Dec 5, 2019Updated 6 years ago
• NBChub / bgcflow

  View on GitHub
  Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)
  ☆52Dec 22, 2024Updated last year
• gaberoo / FragGeneScan

  View on GitHub
  ☆16Aug 1, 2022Updated 3 years ago