bioinfo-ut / PhenotypeSeeker
Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains
☆19Updated last week
Related projects ⓘ
Alternatives and complementary repositories for PhenotypeSeeker
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated last year
- StrainFinder☆27Updated 6 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆28Updated last year
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆23Updated 6 years ago
- Gene-flank analysis tool☆26Updated 6 months ago
- Phylogeny Enhanded Prediction of PAN-genome☆39Updated 4 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆43Updated last year
- OPAL: Open-community Profiling Assessment tooL☆27Updated 3 months ago
- GTDB taxonomy taxdump files with trackable TaxIds☆49Updated 6 months ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequences☆59Updated 4 years ago
- A toolkit for prokaryotic comparative genomics☆25Updated last week
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- ☆51Updated 3 years ago
- A python library for predicting phage lifestyle based on genome sequence☆35Updated last year
- Estimate metagenomic coverage and sequence diversity☆46Updated 3 months ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- ☆45Updated 7 months ago
- IslandPath standalone software☆31Updated last year
- ☆16Updated 4 years ago
- Split Kmer Analysis☆63Updated 2 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆25Updated last week
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆22Updated 3 weeks ago
- Set of utilities on sequences and BAM files☆25Updated 3 years ago
- Pangenome analysis of eukaryotes.☆18Updated 4 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated last year
- Improvement of metagenome-assembled genomes☆49Updated 4 years ago
- Prophage Activity Estimator☆26Updated 5 months ago
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated 9 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 3 years ago