Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains
☆21Jan 5, 2026Updated 7 months ago
Alternatives and similar repositories for PhenotypeSeeker
Users that are interested in PhenotypeSeeker are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Learn interpretable computational phenotyping models from k-merized genomic data☆53Aug 9, 2022Updated 4 years ago
- Program for finding horizontal gene transfer using BLAST result☆11May 26, 2023Updated 3 years ago
- ☆18Feb 19, 2021Updated 5 years ago
- MicroPheno Project☆12Oct 21, 2022Updated 3 years ago
- A library of Machine Learning tools to predict antibiotic resistance from NGS data☆18May 30, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Feb 3, 2021Updated 5 years ago
- ☆29Jun 12, 2024Updated 2 years ago
- Visualization of the pan-genome output by panX☆68Jun 16, 2025Updated last year
- MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data☆18Nov 30, 2022Updated 3 years ago
- Visualisation application for Klebsiella genotypes generated by Kleborate.☆10Mar 10, 2026Updated 5 months ago
- Code repository for machine learning and computational analysis of large-scale microbial genomics data (https://rdcu.be/9rHj)☆20May 12, 2025Updated last year
- ☆15Apr 19, 2018Updated 8 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆65Jun 16, 2025Updated last year
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆33Sep 20, 2017Updated 8 years ago
- The genome annotation service provides automated gene annotation based on the RAST system. This deploys both client and service component…☆11Sep 22, 2020Updated 5 years ago
- Read error correction tool for PacBio data☆12Dec 11, 2024Updated last year
- ☆15May 22, 2025Updated last year
- PanGenomePipeline☆16Apr 10, 2024Updated 2 years ago
- ☆16Aug 1, 2022Updated 4 years ago
- ☆13Aug 30, 2023Updated 2 years ago
- Accurate read-based metagenome characterization using a hierarchical suite of unique signatures. Please visit our homepage:☆23Jan 29, 2019Updated 7 years ago
- For distributing patric related code☆28Dec 19, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- abawaca is a binning program for metagenomics☆13May 20, 2017Updated 9 years ago
- Antibiotic resistance genes (ARGs) have accelerated microbial threats to human health during the last decade. Here we determined the risk…☆19Apr 8, 2022Updated 4 years ago
- Bacterial analysis toolbox for full ESKAPE pathogen characterization and profiling the resistome, mobilome, virulome & phylogenomics usin…☆27Jan 30, 2025Updated last year
- Neural Bacteriocin Identifier - a recurrent neural network based software to predict bacteriocins from protein sequences.☆18Mar 25, 2023Updated 3 years ago
- ☆22Updated this week
- Code for doing MIC predictions on genomes☆42Dec 5, 2019Updated 6 years ago
- Antibiotic resistance predictions in minutes on a laptop☆50Mar 7, 2019Updated 7 years ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆22Sep 19, 2024Updated last year
- ☆19Jan 16, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆253Updated this week
- The MG-RAST Backend -- the API server☆46Apr 27, 2023Updated 3 years ago
- A Better Sequencing Simulator for Metagenomics☆21May 8, 2020Updated 6 years ago
- Whole genome focused array SNP typer☆14Feb 2, 2026Updated 6 months ago
- ☆16Jun 21, 2023Updated 3 years ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆157Oct 2, 2025Updated 10 months ago
- R package for annotating metagenomic datasets with taxonomic information☆10Feb 11, 2020Updated 6 years ago