bioinfo-ut / PhenotypeSeekerLinks
Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains
☆19Updated 3 months ago
Alternatives and similar repositories for PhenotypeSeeker
Users that are interested in PhenotypeSeeker are comparing it to the libraries listed below
Sorting:
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- ☆53Updated 4 years ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆39Updated 3 weeks ago
- A toolkit for prokaryotic comparative genomics☆49Updated 5 months ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 5 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- ☆43Updated last year
- Detection of NCLDV signatures in 'omic data☆35Updated last year
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆29Updated last year
- SHOOT.bio - the phylogenetic search engine☆25Updated 2 years ago
- ☆28Updated 3 years ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆39Updated 2 years ago
- Gene-flank analysis tool☆28Updated 7 months ago
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- Scalable creating/updating of metagenome profiling databases☆61Updated 3 weeks ago
- strain-level analysis tools☆38Updated 8 months ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆40Updated last month
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆68Updated last week
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆28Updated last week
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆20Updated last year
- Prokaryotic Pangenome Analysis☆24Updated 3 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆59Updated 4 years ago
- Locus and lineage tests for bacterial GWAS☆29Updated 7 years ago
- Strain Prediction and Analysis with Representative SEquence☆20Updated 7 months ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆24Updated 7 years ago