mdsufz / OrtSuiteLinks
Prediction of microbial interactions in complex communities
☆12Updated 9 months ago
Alternatives and similar repositories for OrtSuite
Users that are interested in OrtSuite are comparing it to the libraries listed below
Sorting:
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Updated 8 months ago
- A Hierarchical Approach to Pangenomics Inference☆11Updated last year
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆12Updated last year
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆14Updated last year
- Automatic eukaryotic taxonomic classification☆28Updated 3 weeks ago
- MAG Circularization Method☆33Updated 3 years ago
- ☆25Updated last year
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆24Updated 2 years ago
- Identify and remove contaminants from metagenome-assembled genomes☆18Updated last year
- Population genomics from metagenomes☆11Updated 9 months ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated 9 months ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 3 years ago
- MetagenOmic read Re-Assigner and abundance quantifier☆19Updated 4 months ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated 10 months ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- ☆16Updated 4 years ago
- ☆22Updated 2 years ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 4 years ago
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆13Updated 10 months ago
- Quickly get the taxonomy of a genome☆10Updated last year
- Tools for analyzing trees☆14Updated last month
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated 10 months ago
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- ☆13Updated last year
- A metatranscriptomic pipeline optimized for the study of microeukaryotes.☆16Updated 6 months ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- scripts for microbiome analysis☆11Updated 10 months ago