mdsufz / OrtSuite
Prediction of microbial interactions in complex communities
☆12Updated 6 months ago
Alternatives and similar repositories for OrtSuite:
Users that are interested in OrtSuite are comparing it to the libraries listed below
- A Hierarchical Approach to Pangenomics Inference☆11Updated 10 months ago
- MetagenOmic read Re-Assigner and abundance quantifier☆18Updated 2 weeks ago
- ☆25Updated last year
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆12Updated 4 months ago
- ☆22Updated last year
- MAG Circularization Method☆33Updated 2 years ago
- Population genomics from metagenomes☆11Updated 5 months ago
- Identify and remove contaminants from metagenome-assembled genomes☆18Updated 11 months ago
- Quickly get the taxonomy of a genome☆10Updated last year
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆12Updated last year
- ☆10Updated 2 weeks ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆31Updated 5 months ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆23Updated last year
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 2 years ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated 7 months ago
- Metagenomic Estimation of Dietary Intake and Content.☆15Updated 2 weeks ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆22Updated 6 months ago
- Automatic eukaryotic taxonomic classification☆28Updated 4 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆25Updated 3 months ago
- Identifying misassemblies via deep learning☆11Updated 9 months ago
- ☆11Updated last year
- http://huttenhower.sph.harvard.edu/waafle☆11Updated last month
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆18Updated last year
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 4 years ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆32Updated last year
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆12Updated 11 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and met…☆43Updated last month
- ☆16Updated 4 years ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆18Updated 3 years ago