mdsufz / OrtSuiteLinks
Prediction of microbial interactions in complex communities
☆11Updated last year
Alternatives and similar repositories for OrtSuite
Users that are interested in OrtSuite are comparing it to the libraries listed below
Sorting:
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆14Updated last year
- ☆14Updated 2 years ago
- Population genomics from metagenomes☆12Updated last year
- MAG Circularization Method☆32Updated 2 weeks ago
- ☆26Updated 2 years ago
- A Hierarchical Approach to Pangenomics Inference☆12Updated last year
- ☆24Updated 9 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated last year
- metagenome population recombination rate estimation pipeline☆12Updated 3 weeks ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆22Updated 3 months ago
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆14Updated last year
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 6 months ago
- Hydrocarbon biodegradation gene annotation☆18Updated 3 years ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 5 years ago
- Calculate assocations between genes and traits☆29Updated 8 months ago
- Automatic eukaryotic taxonomic classification☆28Updated 6 months ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Updated 3 years ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Updated 3 years ago
- ☆16Updated 6 months ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆25Updated this week
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆23Updated 2 years ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated last year
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Updated last year
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- tool to determine optimal refrerence genome given a set of fasta files☆15Updated 2 years ago
- scripts for microbiome analysis☆11Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆51Updated last year