METAREP: JCVI Metagenomics Reports - an open source tool for high-performance comparative metagenomics
☆26Mar 21, 2013Updated 13 years ago
Alternatives and similar repositories for METAREP
Users that are interested in METAREP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An extension of Velvet assembler to de novo metagenome assembly from short sequence reads☆15May 29, 2012Updated 14 years ago
- The Nifty GNU Sequence Library☆11May 28, 2013Updated 13 years ago
- PhylOTU identifies microbial OTUs from metagenomic data☆24May 16, 2013Updated 13 years ago
- ☆34Sep 20, 2017Updated 9 years ago
- DNA, Amino Acid and RNA Tests☆33Jun 13, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆82Feb 17, 2016Updated 10 years ago
- SEAStAR is a package of tools supporting the construction of complete analysis pipelines for next-generation (Illumina®, SOLiD™) sequenci…☆13Feb 27, 2019Updated 7 years ago
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Mar 17, 2016Updated 10 years ago
- Tree hidden Markov model for learning epigenetic states in multiple cell types☆29Jul 11, 2013Updated 13 years ago
- A metagenomic and isolate assembly and analysis pipeline built with AMOS☆92Nov 20, 2017Updated 8 years ago
- The fantabulous HMM compiler☆11Oct 18, 2026Updated 2 weeks ago
- Datamonkey - Run state-of-the-art statistical models through the comfort of your browser☆10Updated this week
- MIX: Combining multiple assemblies from NGS data☆13Apr 14, 2016Updated 10 years ago
- Extends the scons build tool for reproducible workflows in bioinformatics.☆16Apr 16, 2026Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- EMIRGE reconstructs full length ribosomal genes from short read sequencing data.☆38Sep 15, 2023Updated 3 years ago
- De novo assembly of nanopore reads using nextflow☆20Aug 5, 2020Updated 6 years ago
- ☆12Oct 17, 2017Updated 9 years ago
- Automatically exported from code.google.com/p/ebi-metagenomics☆11Jun 25, 2018Updated 8 years ago
- Scripts and resources for analyzing sequence data for select eco-functional genes☆20May 25, 2017Updated 9 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆28Sep 7, 2019Updated 7 years ago
- ☆12Mar 10, 2024Updated 2 years ago
- rSPR is a software package for calculating rooted subtree-prune-and-regraft distances and rooted agreement forests.☆13Jan 2, 2024Updated 2 years ago
- Automatically calculate phylogenetic trees from bacterial core genes☆21May 28, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆20Dec 7, 2020Updated 5 years ago
- Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains☆21Jan 5, 2026Updated 9 months ago
- Metagenomics Analysis Tools☆24May 7, 2018Updated 8 years ago
- ☆26Oct 31, 2019Updated 7 years ago
- De novo Extraction of Strains from MetAgeNomes☆72Jun 17, 2020Updated 6 years ago
- Partitioning and analysis methods for large, complex sequence datasets☆37Oct 17, 2018Updated 8 years ago
- Analysis of Ebola virus genomes☆17May 18, 2015Updated 11 years ago
- A collection of plots for long read sequencing FastQ files from devices like Oxford Nanopore's MinION and PromethION.☆12Feb 14, 2023Updated 3 years ago
- ☆29Jun 12, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Tools for phylogenetic data analysis including visualization and cluster-computing support.☆15Dec 18, 2021Updated 4 years ago
- Tool for visualising assemblies.☆17Sep 15, 2015Updated 11 years ago
- eXtasy: Variant Prioritization by Genomic Data Fusion☆13Feb 19, 2014Updated 12 years ago
- 16S rRNA database☆13Nov 29, 2018Updated 7 years ago
- a simple read-only sequence database, designed for short reads☆20Dec 19, 2016Updated 9 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆47Sep 3, 2020Updated 6 years ago
- de novo sequence assembler using string graphs☆244Aug 8, 2019Updated 7 years ago