thomazbastiaanssen / anansiLinks
ANnotation-based ANalysis of Specific Interactions
☆10Updated this week
Alternatives and similar repositories for anansi
Users that are interested in anansi are comparing it to the libraries listed below
Sorting:
- Basic Sequence Taxonomy Annotator☆41Updated last year
- Miscellaneous functions for metagenomic analysis.☆50Updated last month
- ☆56Updated last week
- Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project☆12Updated 3 years ago
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆22Updated 2 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆71Updated 2 years ago
- ☆13Updated 5 years ago
- Data, scripts, and lectures for the Introduction to Metagenomics Summer Workshop 2019.☆34Updated 6 years ago
- Calculate the normalizing factors for zeroinflated sequencing data such as microbiome sequencing data☆16Updated 5 months ago
- ☆20Updated 5 years ago
- Compare different differential abundance and expression methods☆50Updated 3 years ago
- Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TE…☆84Updated 9 months ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated last month
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆24Updated 9 months ago
- functions for analyzing phyloseq data☆28Updated 5 months ago
- Inference of microbial interaction networks from large-scale heterogeneous abundance data☆86Updated last year
- Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA☆35Updated 5 years ago
- diversity estimation under ecological networks☆84Updated 3 months ago
- The Microbiome Interpretable Temporal Rule Engine☆47Updated 4 years ago
- 16S taxonomy assignment using an ecosystem-specific database.☆17Updated 2 years ago
- AMBER: Assessment of Metagenome BinnERs☆31Updated 6 months ago
- An R package for microbial community analysis in an environmental context☆67Updated 4 years ago
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆24Updated 3 years ago
- This repository contains curricular material, lecture notes, labs, assignments, exams, code, solutions from the Spring 2022 version of BI…☆13Updated 3 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated last month
- Speedy versions of phyloseq functions☆48Updated last year
- Network construction, analysis, and comparison for microbial compositional data☆169Updated 3 months ago
- statdivlab's teaching materials for STAMPS @ the MBL in 2019☆12Updated 5 years ago
- (Meta-)genome screening for functional and natural product gene sequences☆89Updated this week