EvolBioInf / fur
Find Unique genomic Regions
☆29Updated 2 weeks ago
Alternatives and similar repositories for fur:
Users that are interested in fur are comparing it to the libraries listed below
- Trimming tool for Oxford Nanopore sequence data☆21Updated 3 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 3 years ago
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆14Updated 2 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆29Updated 3 months ago
- Fast and scalable nanopore adaptive sampling☆33Updated last year
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated last month
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- a Contig Alignment Tool for Pairwise Assembly Comparison☆13Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- ☆29Updated last year
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last year
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- ☆20Updated 3 years ago
- Colinear block visualisation tool☆30Updated last year
- OPAL: Open-community Profiling Assessment tooL☆28Updated 2 months ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆50Updated this week
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Remove human reads from a sequencing run☆40Updated 6 months ago
- A script for comparing old vs new versions of genome annotations☆20Updated last year