EvolBioInf / fur
Find Unique genomic Regions
☆29Updated 2 months ago
Alternatives and similar repositories for fur:
Users that are interested in fur are comparing it to the libraries listed below
- Trimming tool for Oxford Nanopore sequence data☆21Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- Fast and scalable nanopore adaptive sampling☆33Updated last year
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 3 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆41Updated 4 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆24Updated 11 months ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆29Updated 2 months ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆27Updated 10 months ago
- ☆29Updated last year
- Full-length de novo viral haplotype reconstruction from noisy long reads☆17Updated last year
- ☆25Updated 3 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated last week
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆14Updated 2 years ago
- compare sequences to a shared root reference sequence.☆24Updated 3 years ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated last week
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- A method of assessing sequence complexity based on kmer frequencies☆31Updated 6 years ago
- A script for comparing old vs new versions of genome annotations☆20Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- SHOOT.bio - the phylogenetic search engine☆24Updated last year
- Colinear block visualisation tool☆30Updated last year
- The shiny app that accompanies the ngsReports R package☆14Updated 3 years ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆21Updated last year