Find Unique genomic Regions
☆34Sep 29, 2026Updated last month
Alternatives and similar repositories for fur
Users that are interested in fur are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- recompute GFA link overlaps☆26Sep 14, 2022Updated 4 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Nov 1, 2022Updated 3 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆18Mar 3, 2026Updated 7 months ago
- taxonomic classifier based on the kraken2 algorithms and more☆46Dec 12, 2025Updated 10 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated last year
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 9 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Jan 9, 2021Updated 5 years ago
- Make phylogenetic trees and lineages from the NCBI Taxonomy database☆14Mar 19, 2023Updated 3 years ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Apr 29, 2021Updated 5 years ago
- ☆12Feb 14, 2023Updated 3 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆48Jul 24, 2025Updated last year
- An efficient index for the colored, compacted, de Bruijn graph☆113Jun 19, 2026Updated 4 months ago
- Long read to reference genome mapping tool☆13Mar 14, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆14Jan 20, 2016Updated 10 years ago
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Jun 4, 2022Updated 4 years ago
- A versatile toolkit for k-mers with taxonomic information☆84Oct 20, 2026Updated last week
- ☆10Jun 9, 2020Updated 6 years ago
- Nextflow pipeline for genome annotation of protein-coding genes☆17Dec 21, 2023Updated 2 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- ☆17May 1, 2025Updated last year
- Basic Local Alignment and Search Tool for Oxford Nanopore Long Sequences☆10Aug 1, 2016Updated 10 years ago
- Filter of Pairwise Alignement☆45Jan 31, 2022Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- CLI tool for querying the Genome Taxonomy Database (GTDB). Batch search, genome cards, taxon lineages, and cross-release taxonomic compar…☆33Sep 18, 2026Updated last month
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- finding conserved regions in highly diverse genomes☆16May 25, 2026Updated 5 months ago
- Protein Alignment and Detection Interface☆61Apr 1, 2024Updated 2 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54May 16, 2023Updated 3 years ago
- Histosketching Using Little Kmers☆56May 25, 2023Updated 3 years ago
- ☆26Jul 1, 2026Updated 3 months ago
- De novo genome assembler.☆12Jul 30, 2018Updated 8 years ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Dec 11, 2020Updated 5 years ago
- A read alignment visualization library for long reads☆10Aug 6, 2022Updated 4 years ago
- semi-reference-based short read compression☆11Mar 5, 2019Updated 7 years ago
- seqfu - Sequece Fastx Utilities☆133Oct 13, 2026Updated 2 weeks ago
- Hypervariable region primer-based extractor for 16S rRNA and other SSU/LSU sequences.☆10Jul 23, 2026Updated 3 months ago
- One pure-Rust binary that finds genes in phages, viruses, giant viruses, crassphages, bacteria, archaea, eukaryotes — and raw sequencing …☆36Oct 14, 2026Updated 2 weeks ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆16Aug 1, 2026Updated 2 months ago