Grinder is a versatile open-source bioinformatic tool to create simulated omic shotgun and amplicon sequence libraries for all main sequencing platforms.
☆18Aug 30, 2018Updated 7 years ago
Alternatives and similar repositories for biogrinder
Users that are interested in biogrinder are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25May 18, 2024Updated last year
- The MG-RAST pipeline☆25Nov 30, 2022Updated 3 years ago
- EnsembleAssembler performs de novo assembly of pathogen genomes from metagenomic samples sequenced using Illumina platforms☆10Nov 30, 2014Updated 11 years ago
- Importing vg json graphs to Python data structures.☆12Nov 11, 2020Updated 5 years ago
- Variant Alert!, a framework to monitor every significant alteration in variant classification and gene-disease association between two ve…☆14Jul 19, 2021Updated 4 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Parametric sweep of simulated microbial communities and metagenomic sequencing.☆11Jul 15, 2022Updated 3 years ago
- Detect contigs of complete circular genomes☆23Jun 6, 2019Updated 6 years ago
- Forensic analysis tool useful in backwards computing information from next-generation sequencing data.☆11Jan 20, 2026Updated 2 months ago
- ☆12May 11, 2016Updated 9 years ago
- Dinoflagellate Annotation Workflow☆15Oct 3, 2022Updated 3 years ago
- Strain-level Metagenomic Estimation of Growth rate (SMEG) measures growth rates of microbial strains from complex metagenomic dataset☆20May 22, 2020Updated 5 years ago
- mapping files for MetaCyc pathway☆13Sep 14, 2019Updated 6 years ago
- Very very long reads, indeed☆13Apr 30, 2017Updated 8 years ago
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆23Jun 27, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- GenomeTools: Scripts and Classes for Working with Genomic Data☆12Jun 7, 2018Updated 7 years ago
- Generate mutated sequence files from a reference genome.☆11Dec 26, 2022Updated 3 years ago
- A nextflow version of the Wochenende reference metagenome binning and visualization pipeline☆16Mar 4, 2026Updated 3 weeks ago
- Docker images of bioinformatics software☆21Jun 15, 2017Updated 8 years ago
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆35Jul 12, 2022Updated 3 years ago
- Scripts☆10Jun 29, 2016Updated 9 years ago
- FaStore - high-performance FASTQ files compressor☆19May 19, 2022Updated 3 years ago
- repository-based plasmid design☆31Nov 28, 2022Updated 3 years ago
- ☆12Oct 13, 2023Updated 2 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆14Aug 26, 2024Updated last year
- ☆35Nov 8, 2023Updated 2 years ago
- Phylogenetic Isometric Log Ratio☆19Oct 15, 2024Updated last year
- RNAsik - more than just a pipeline☆13Feb 6, 2024Updated 2 years ago
- A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.☆26Feb 2, 2017Updated 9 years ago
- ☆29Jun 12, 2024Updated last year
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Mar 12, 2024Updated 2 years ago
- A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, …☆89Mar 22, 2026Updated last week
- Process Illumina instrument data into SAM/BAM/CRAM files.☆10Mar 9, 2026Updated 3 weeks ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Updated this week
- Giraffe_View is designed to help assess and visualize the accuracy of long-read sequencing datasets.☆13Sep 3, 2024Updated last year
- scripts for estimating bacteria replication rates based on population genome copy number variation☆74Dec 28, 2019Updated 6 years ago
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies☆18Jun 14, 2023Updated 2 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆65Jun 16, 2025Updated 9 months ago
- A deep learning based bioinformatics project on epigenetics in Type 2 Diabetes.☆17Mar 25, 2023Updated 3 years ago
- PhylOTU identifies microbial OTUs from metagenomic data☆24May 16, 2013Updated 12 years ago