zyxue / biogrinderLinks
Grinder is a versatile open-source bioinformatic tool to create simulated omic shotgun and amplicon sequence libraries for all main sequencing platforms.
☆17Updated 7 years ago
Alternatives and similar repositories for biogrinder
Users that are interested in biogrinder are comparing it to the libraries listed below
Sorting:
- Please see https://github.com/chanzuckerberg/czid-workflows for the latest version of CZ ID workflows.☆27Updated 3 years ago
- de novo virus assembler of Illumina paired reads☆57Updated 4 years ago
- ☆29Updated last year
- A Better Sequencing Simulator for Metagenomics☆20Updated 5 years ago
- A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads☆68Updated 3 years ago
- Genome inference from a population reference graph☆96Updated 6 months ago
- De novo Extraction of Strains from MetAgeNomes☆71Updated 5 years ago
- Forensic analysis tool useful in backwards computing information from next-generation sequencing data.☆12Updated 3 weeks ago
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆94Updated 5 months ago
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago
- Assembling the cause of phenotypes and genotypes from NGS data☆29Updated 5 years ago
- Antibiotic resistance predictions in minutes on a laptop☆50Updated 6 years ago
- Multi-threaded Distributed Memory Overlap-Layout-Consensus (OLC) Metagenome Assembler☆24Updated 6 years ago
- Reduced Alphabet based Protein similarity Search☆40Updated 4 years ago
- An Oxford Nanopore Basecaller☆70Updated 4 years ago
- Bonsai: Fast, flexible taxonomic analysis and classification☆71Updated last year
- ANNOgesic - A Swiss army knife for the RNA-Seq based annotation of bacterial/archaeal genomes☆31Updated last year
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Updated 2 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆24Updated last year
- Tool for quick offline batch conversion of Genbank IDs or accessions to taxonomy strings☆14Updated last year
- Strain Resolution ON Graphs☆47Updated 2 years ago
- StrainEst - abundance estimation of strains☆20Updated 5 years ago
- 🔗Genome assembly scaffolder using minimizer graphs☆84Updated last year
- Graph-based mapping of long sequences, noisy or HiFi.☆55Updated 5 years ago
- abi2fastq is a small utility to convert Sanger sequencing reads in .abi (applied biosystems) format to FASTQ☆11Updated 8 years ago
- MicrobeDirectory 2.0☆22Updated 5 years ago
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Updated 4 months ago
- variant discovery and annotation using GATK and Ensembl☆17Updated 12 years ago
- Pipeline to generate NGS reads from a phylogeny☆39Updated 3 years ago
- Histosketching Using Little Kmers☆56Updated 2 years ago