Introduction to Nanopore Sequencing - Prac material and presentations from The Omics Australia Tutorials Sydney (TOAST) workshop 19th - 20th of March 2018.
☆10Jan 12, 2019Updated 7 years ago
Alternatives and similar repositories for toast2018
Users that are interested in toast2018 are comparing it to the libraries listed below
Sorting:
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Apr 29, 2021Updated 4 years ago
- A lightweight kmer-based algorithm for designing diagnostic CRISPR assays using genome data.☆13Aug 19, 2024Updated last year
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated last year
- This project contains simple methods to measure sample relatedness and identify potential swaps and contamination☆10Jan 8, 2016Updated 10 years ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Dec 5, 2018Updated 7 years ago
- Helper scripts for making phylogenies☆15Jun 7, 2024Updated last year
- Linking MAGs with 16S rRNA marker genes☆27Feb 8, 2025Updated last year
- A simulator for horizontal gene transfer (HGT) in microbial communities☆10Oct 5, 2020Updated 5 years ago
- A Swiss-Army-Knife for Bioinformaticians☆14Mar 3, 2026Updated 2 weeks ago
- Extremely accurate algorithm used to group DNA sequences from microbial communities into operational taxonomic units (proxy for species) …☆14Nov 20, 2018Updated 7 years ago
- A solutions manual for all excercises in the Ziheng Yang's two seminall books on statistical molecular evolution: Computational Molecular…☆23Oct 6, 2025Updated 5 months ago
- Annotate your metagenome assemblies☆11Jul 19, 2018Updated 7 years ago
- Python package for common tasks in bioinformatic.☆12Sep 24, 2025Updated 5 months ago
- Digital Database of Microbial Phenotypes. Like an online Bergey's Manual.☆13Mar 1, 2012Updated 14 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated last year
- The genome annotation service provides automated gene annotation based on the RAST system. This deploys both client and service component…☆11Sep 22, 2020Updated 5 years ago
- Renames headers in FASTA file☆12Jun 28, 2017Updated 8 years ago
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Jun 19, 2019Updated 6 years ago
- accessory functions for processing microbial community data☆12Dec 24, 2022Updated 3 years ago
- SaffronTree: Reference free rapid phylogenetic tree construction from raw read data☆25Jun 11, 2020Updated 5 years ago
- A server for maintaining high-throughput sequencing QC data☆13Aug 5, 2025Updated 7 months ago
- Masks recombinant regions in an alignment based on ClonalFrameML output☆10May 18, 2018Updated 7 years ago
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆12Dec 2, 2024Updated last year
- C++ wrapper to tabix indexer☆17Jun 27, 2025Updated 8 months ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Feb 27, 2026Updated 3 weeks ago
- Formats Roary output for viewing in FriPan☆11May 23, 2018Updated 7 years ago
- Parse scientific names using gnparser (https://github.com/gnames/gnparser)☆15Jan 1, 2026Updated 2 months ago
- METAREP: JCVI Metagenomics Reports - an open source tool for high-performance comparative metagenomics☆26Mar 21, 2013Updated 12 years ago
- Software for nanopore data analysis☆29Sep 10, 2014Updated 11 years ago
- Whole genome core alignments from multiple draft genomes☆13Sep 14, 2016Updated 9 years ago
- A place to put docker build files☆13Oct 3, 2023Updated 2 years ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Oct 11, 2018Updated 7 years ago
- Salmonella serotyping from genome sequencing data☆11Sep 3, 2018Updated 7 years ago
- Crowdsourcing a directory of cryptids and their range maps.☆20Jul 16, 2023Updated 2 years ago
- R tool to analyse and integrate multiple -omics data☆15Jan 4, 2026Updated 2 months ago
- MUMmer3☆17Jan 12, 2022Updated 4 years ago
- a versatile toolkit for processing and analyzing diverse types of sequence data☆22Feb 18, 2026Updated last month
- Scripts for calculating features and regression of prokaryote OGT☆25Feb 13, 2024Updated 2 years ago
- Profiler for metagenomics based on NGLess☆13Feb 22, 2024Updated 2 years ago