phiweger / darkq
A message queue for genomic surveillance
☆20Updated 3 years ago
Alternatives and similar repositories for darkq:
Users that are interested in darkq are comparing it to the libraries listed below
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 3 months ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆17Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- CAMITAX: Taxon labels for microbial genomes☆28Updated last year
- exploring viral genome assembly with variation graph tools☆19Updated 4 years ago
- Finding prophage regions in bacterial genomes using brute force☆22Updated 2 years ago
- ☆15Updated 8 months ago
- software to identify primers that can distinguish genomes☆21Updated 2 months ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- ☆16Updated last year
- ☆22Updated last year
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 6 years ago
- Northern Arizona SNP Pipeline☆19Updated 4 months ago
- A straightforward bioinformatic pipeline for detecting a bacterial strain in one or more metagenome(s).☆19Updated 6 years ago
- Simulate mutations in genomes☆15Updated 4 years ago
- ☆26Updated last year
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆33Updated 3 years ago
- ☆19Updated 8 years ago
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 3 months ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 2 years ago
- ☆28Updated 9 months ago
- kaamer - protein identification based on amino acid kmers☆12Updated 2 years ago
- Bacterial Operon Finder for Functional Organization☆14Updated last year
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- Raspir, the rare species identifier☆11Updated last year
- A Shotgun Metagenome Annotation Pipeline☆23Updated 8 years ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- Factorize metagenotypes to infer strains and their abundances☆11Updated 5 months ago