A message queue for genomic surveillance
☆19Oct 14, 2021Updated 5 years ago
Alternatives and similar repositories for darkq
Users that are interested in darkq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Luslab nextflow modules☆14Apr 30, 2021Updated 5 years ago
- A tool for managing your pores☆10Jul 22, 2026Updated 3 months ago
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆14Sep 29, 2026Updated last month
- Sketch-based surveillance platform☆13Oct 22, 2026Updated last week
- Benchmark and toy datasets☆12Jan 8, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- DEPRECIATED! Please use nf-core/tools instead☆19Aug 8, 2018Updated 8 years ago
- Static website for the PH4AGE alliance☆14Oct 27, 2023Updated 3 years ago
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- ☆16May 21, 2026Updated 5 months ago
- Split Kmer Analysis☆68May 26, 2022Updated 4 years ago
- Predict plasmids from uncorrected long read data☆41Feb 27, 2026Updated 8 months ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆21Aug 13, 2026Updated 2 months ago
- Use tbl2asn forever by pretending that it's still 2019☆12Jan 24, 2020Updated 6 years ago
- kaamer - protein identification based on amino acid kmers☆11Mar 7, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Output FASTQ summary statistics in JSON format☆29Oct 30, 2022Updated 4 years ago
- Pipeline for analysing intergenic regions in bacteria☆39Oct 25, 2019Updated 7 years ago
- de novo virus assembler of Illumina paired reads☆59May 17, 2021Updated 5 years ago
- Archived - please see updated sccmec tool at link below☆13Aug 30, 2024Updated 2 years ago
- ☆13May 29, 2026Updated 5 months ago
- exploring viral genome assembly with variation graph tools☆20May 18, 2020Updated 6 years ago
- A taxonomic classifier of plasmids☆32Jul 7, 2021Updated 5 years ago
- Repository containing a method for automatically identifying pathogen lineages from a phylogeny.☆18May 19, 2023Updated 3 years ago
- Official place for proposals and details around monkeypox virus lineage designations☆23Jul 7, 2026Updated 3 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ARTIC SARS-CoV-2 workflow and reporting☆51Apr 25, 2025Updated last year
- Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub☆25Mar 26, 2022Updated 4 years ago
- A genomic minhashing implementation in Rust☆100Jul 8, 2026Updated 3 months ago
- De novo assembly of nanopore reads using nextflow☆20Aug 5, 2020Updated 6 years ago
- Efficient and comprehensive metadata acquisition from the NCBI databases (includes SRA).☆56May 25, 2022Updated 4 years ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆27Jul 13, 2023Updated 3 years ago
- **DEFUNCT** dada2-based Nextflow pipeline for multiple amplicon data. See website for up-to-date version☆20Nov 1, 2019Updated 6 years ago
- A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), wit…☆92Nov 8, 2023Updated 2 years ago
- LYVE-SET, a method of using hqSNPs to create a phylogeny, especially for outbreak investigations☆26Aug 26, 2024Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Phylogeny Enhanded Prediction of PAN-genome☆45Jul 17, 2020Updated 6 years ago
- Indexing & querying large assembly graphs -- in space, no one can hear you miao!☆120Jan 29, 2026Updated 9 months ago
- Order and orientation of complete bacterial genomes☆29Jun 30, 2026Updated 3 months ago
- GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata. Click…☆92Oct 3, 2026Updated 3 weeks ago
- ☆19Nov 8, 2022Updated 3 years ago
- SARS-CoV-2 workflow for nanopore sequence data☆42Aug 13, 2026Updated 2 months ago
- Benchmark datasets for WGS analysis☆40Aug 4, 2019Updated 7 years ago