Alternatives and similar repositories for Scillus

Users that are interested in Scillus are comparing it to the libraries listed below

• HaojiaWu / plot1cell
  A R package for advanced single cell data viz
  ☆68Updated 4 months ago
• Coolgenome / iTALK
  ☆64Updated 6 years ago
• arc85 / celltalker
  Inference of cell-cell communication from single-cell RNAseq data
  ☆48Updated 8 months ago
• jlaffy / infercna
  Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data
  ☆45Updated last year
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆75Updated 5 years ago
• ycl6 / StackedVlnPlot
  Create stacked violin plot
  ☆51Updated 3 years ago
• genecell / COSGR
  Accurate and fast cell marker gene identification with COSG
  ☆62Updated 3 years ago
• guokai8 / scGSVA
  scGSVA: Perform GSVA for single cell RNA seq
  ☆68Updated last year
• liziyie / scDVA
  An R shiny based tool used for single cell RNA-seq data visualization and analysis.
  ☆34Updated 5 years ago
• Japrin / STARTRAC
  STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
  ☆112Updated 8 months ago
• powellgenomicslab / Nebulosa
  R package to visualize gene expression data based on weighted kernel density estimation
  ☆109Updated last year
• carmonalab / scGate
  marker-based purification of cell types from single-cell RNA-seq datasets
  ☆134Updated 5 months ago
• RausellLab / CelliD
  Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.
  ☆95Updated 2 years ago
• kerseviciute / aPEAR
  Enrichment Networks for Pathway Enrichment Analysis
  ☆63Updated 2 years ago
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆90Updated last week
• AntonioDeFalco / SCEVAN
  R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …
  ☆119Updated 3 weeks ago
• vertesy / Seurat.utils
  Various utility functions for Seurat v5 single-cell analysis
  ☆56Updated last week
• campbio / decontX
  Methods for decontamination of single cell data
  ☆53Updated 10 months ago
• LocasaleLab / Single-Cell-Metabolic-Landscape
  Pipeline for exploring metebolic heterogeneity at single-cell resolution
  ☆74Updated 5 years ago
• arc85 / singleseqgset
  Gene set enrichment analysis for single-cell RNAseq data
  ☆30Updated 2 years ago
• rpolicastro / scProportionTest
  ☆74Updated 2 years ago
• SGI-LungCancer / SingleCell
  Code repository for single cell RNA-seq
  ☆39Updated 5 years ago
• carmonalab / STACAS
  R package for semi-supervised single-cell data integration
  ☆92Updated last week
• haniffalab / scRNA-seq_analysis
  Single cell RNA-seq analysis bundle
  ☆37Updated 6 years ago
• navinlabcode / HumanBreastCellAtlas
  Repository for codes for the HBCA paper
  ☆41Updated 2 years ago
• Japrin / sscClust
  simpler single cell RNAseq data clustering
  ☆42Updated 10 months ago
• Zaoqu-Liu / BioEnricher
  Integrate Analysis and Visualization for Bioinformatic Enrichment Analyzer
  ☆81Updated 2 years ago
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆80Updated 4 months ago
• jackbibby1 / SCPA
  R package for pathway analysis in scRNA-seq data
  ☆76Updated last year
• tgen / banovichlab
  Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).
  ☆47Updated last year