xmc811 / Scillus
R Package for Single-Cell Dataset Processing and Visualization
☆61Updated 3 years ago
Alternatives and similar repositories for Scillus:
Users that are interested in Scillus are comparing it to the libraries listed below
- A R package for advanced single cell data viz☆66Updated last year
- Create stacked violin plot☆46Updated 3 years ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated this week
- ☆60Updated 5 years ago
- A tool for removing doublets from single-cell RNA-seq data☆73Updated 4 years ago
- ☆62Updated 9 months ago
- scGSVA: Perform GSVA for single cell RNA seq☆55Updated 5 months ago
- ☆65Updated 2 years ago
- Integrate Analysis and Visualization for Bioinformatic Enrichment Analyzer☆75Updated last year
- ☆105Updated last month
- Single cell transcriptomics reveals cerebrospinal fluid immune dysregulation during healthy brain aging and cognitive impairment☆27Updated last year
- Repository for codes for the HBCA paper☆36Updated 2 years ago
- ☆79Updated last year
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆79Updated last year
- An R shiny based tool used for single cell RNA-seq data visualization and analysis.☆33Updated 4 years ago
- Code repository for single cell RNA-seq☆34Updated 4 years ago
- Enrichment Networks for Pathway Enrichment Analysis☆50Updated 2 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆63Updated 6 months ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆35Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆77Updated 7 months ago
- Various utility functions for Seurat single-cell analysis☆46Updated 4 months ago
- ☆42Updated 3 years ago
- Methods for decontamination of single cell data☆40Updated 2 months ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆90Updated 4 months ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆100Updated last year
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆74Updated 5 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆44Updated last year
- Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022☆37Updated last year
- SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples☆68Updated 3 years ago
- Accurate and fast cell marker gene identification with COSG☆59Updated 2 years ago