Alternatives and similar repositories for Scillus

Users that are interested in Scillus are comparing it to the libraries listed below

• HaojiaWu / plot1cell
  A R package for advanced single cell data viz
  ☆67Updated last year
• arc85 / celltalker
  Inference of cell-cell communication from single-cell RNAseq data
  ☆48Updated 2 months ago
• Coolgenome / iTALK
  ☆61Updated 5 years ago
• guokai8 / scGSVA
  scGSVA: Perform GSVA for single cell RNA seq
  ☆61Updated 7 months ago
• ycl6 / StackedVlnPlot
  Create stacked violin plot
  ☆49Updated 3 years ago
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆74Updated 4 years ago
• KChen-lab / METAFlux
  ☆66Updated 11 months ago
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆66Updated 8 months ago
• genecell / COSGR
  Accurate and fast cell marker gene identification with COSG
  ☆60Updated 2 years ago
• Japrin / STARTRAC
  STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
  ☆105Updated 2 months ago
• jlaffy / infercna
  Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data
  ☆38Updated last year
• campbio / decontX
  Methods for decontamination of single cell data
  ☆47Updated 4 months ago
• kerseviciute / aPEAR
  Enrichment Networks for Pathway Enrichment Analysis
  ☆53Updated 2 years ago
• vertesy / Seurat.utils
  Various utility functions for Seurat single-cell analysis
  ☆49Updated 6 months ago
• tgen / banovichlab
  Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).
  ☆46Updated last year
• carmonalab / STACAS
  R package for semi-supervised single-cell data integration
  ☆82Updated last month
• liziyie / scDVA
  An R shiny based tool used for single cell RNA-seq data visualization and analysis.
  ☆33Updated 4 years ago
• rpolicastro / scProportionTest
  ☆68Updated last year
• haniffalab / scRNA-seq_analysis
  Single cell RNA-seq analysis bundle
  ☆34Updated 5 years ago
• MarioniLab / miloDE
  Framework for sensitive DE testing (using neighbourhoods)
  ☆70Updated 11 months ago
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆81Updated 9 months ago
• ShellyCoder / cellcall
  inferring cell-cell communication from scRNA-seq of ligand-receptor
  ☆82Updated last year
• jackbibby1 / SCPA
  R package for pathway analysis in scRNA-seq data
  ☆73Updated 10 months ago
• gatelabNW / csf_aging
  Single cell transcriptomics reveals cerebrospinal fluid immune dysregulation during healthy brain aging and cognitive impairment
  ☆27Updated 2 years ago
• saezlab / progeny
  R package for Pathway RespOnsive GENe activity inference
  ☆106Updated 2 years ago
• arc85 / singleseqgset
  Gene set enrichment analysis for single-cell RNAseq data
  ☆28Updated 2 years ago
• TheHumphreysLab / plot1cell
  ☆110Updated 3 months ago
• SGI-LungCancer / SingleCell
  Code repository for single cell RNA-seq
  ☆35Updated 4 years ago
• YutingPKU / SingleCell-Multiomics
  ☆68Updated 2 years ago
• carmonalab / scGate
  marker-based purification of cell types from single-cell RNA-seq datasets
  ☆112Updated 2 months ago