Single Cell Oriented Reconstruction of PANDA-based Individually Optimized Networks
☆27Apr 3, 2026Updated 2 months ago
Alternatives and similar repositories for SCORPION
Users that are interested in SCORPION are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆24Jul 9, 2025Updated 11 months ago
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆75Oct 16, 2025Updated 7 months ago
- ☆18Feb 18, 2021Updated 5 years ago
- Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcript…☆11Jan 15, 2024Updated 2 years ago
- Deconvolution of spatial transcriptomics at single-cell resolution☆22Mar 25, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆14Jan 24, 2024Updated 2 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆102Apr 16, 2026Updated last month
- ☆101May 4, 2026Updated last month
- Unsupervised Inference of Developmental Directions for Single Cells☆26Jan 12, 2024Updated 2 years ago
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆15Apr 12, 2023Updated 3 years ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆15Aug 17, 2023Updated 2 years ago
- ☆27Apr 22, 2026Updated last month
- BiocompR is a R package build upon ggplot2 to improve commonly used plots dedicated to data comparison, dataset exploration and, ultimate…☆18Jan 15, 2025Updated last year
- Single-Cell Inference of Class Switch Recombination☆23Feb 11, 2026Updated 4 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data☆23May 6, 2026Updated last month
- ☆23Apr 17, 2026Updated last month
- Some components that speed up and reduce resource cost for original ALLHiC☆15Jun 21, 2025Updated 11 months ago
- Colour and fill scales for 'ggplot2' using colour spaces.☆15Apr 28, 2026Updated last month
- MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance i…☆46Feb 20, 2025Updated last year
- A permutation-free framework for scalable, robust, and reference-based cell-cell communication analysis in single cell transcriptomics st…☆23May 23, 2026Updated 3 weeks ago
- Gene expression meta-analysis visualization tool☆24Aug 10, 2023Updated 2 years ago
- BulkSignalR☆27Mar 30, 2026Updated 2 months ago
- An r package that works as a wrapper to homologene☆49Nov 2, 2023Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Integrate Analysis and Visualization for Bioinformatic Enrichment Analyzer☆83Dec 16, 2023Updated 2 years ago
- The integration of single cell rank-based gene set enrichment analysis☆157Jan 14, 2026Updated 5 months ago
- Hierarchical Cell Annotation☆31Nov 17, 2024Updated last year
- Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing☆21Nov 18, 2025Updated 6 months ago
- CATG (Collinearity-based Assembly correcTor GUI) is a tool that can correct genome assembly with collinearity and generate tour files for…☆18Jan 24, 2026Updated 4 months ago
- NEPAL is to calculate neuroendocrine (NE) risk score from bulk and single-cell transcriptomics of both human and mouse prostate cancer (P…☆14Apr 23, 2024Updated 2 years ago
- Code for the paper `Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics"☆13Apr 23, 2024Updated 2 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆58Jan 29, 2026Updated 4 months ago
- An R package for visualising cell-cell interactions☆47Mar 16, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆21Jul 7, 2022Updated 3 years ago
- Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)☆34Oct 6, 2022Updated 3 years ago
- ☆11Jul 8, 2024Updated last year
- Cell clustering and communication network inference for single-cell transcriptomics☆15Sep 18, 2024Updated last year
- plots function for array☆102Jun 13, 2024Updated 2 years ago
- Transcriptomics Visualization R package.☆76May 21, 2026Updated 3 weeks ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆623Mar 4, 2026Updated 3 months ago