☆11Dec 12, 2014Updated 11 years ago
Alternatives and similar repositories for CLARI-TE
Users that are interested in CLARI-TE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆11May 7, 2026Updated last month
- An R package to detect, classify, and visualize genome rearrangements☆15Aug 4, 2020Updated 5 years ago
- Transposable Elements Representation Learner (TERL)☆19Jun 2, 2025Updated last year
- Code for the Brassica oleracea/rapa/napus genomic comparison☆16Apr 29, 2021Updated 5 years ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆24Jun 26, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆16Oct 9, 2024Updated last year
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆112Nov 17, 2025Updated 7 months ago
- A Snakemake-based pipeline for gene mapping in Triticeae.☆11Mar 5, 2022Updated 4 years ago
- Modified TIR-Learner for Rice genome☆12Jun 14, 2019Updated 7 years ago
- Direct RNA publication scripts☆11Sep 20, 2017Updated 8 years ago
- mdust from DFCI Gene Indices Software Tools (archived for a historical record only)☆11Jan 2, 2015Updated 11 years ago
- ☆15Feb 22, 2022Updated 4 years ago
- scripts and intermediate files used to annotate TEs in Jiao et al.☆34Apr 12, 2018Updated 8 years ago
- Archived version 1.0.2☆16Nov 25, 2019Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A parallel wrapper for LTR_FINDER☆55Mar 8, 2026Updated 3 months ago
- ☆16Jan 10, 2022Updated 4 years ago
- Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).☆17Mar 13, 2026Updated 3 months ago
- Merge transcriptome read-to-genome alignments into non-redundant transcript models☆20Jan 21, 2026Updated 5 months ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Feb 1, 2021Updated 5 years ago
- ☆17Nov 26, 2023Updated 2 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 7 years ago
- A repo contains historical and updated MTEC libraries.☆19May 18, 2026Updated last month
- ☆23Oct 30, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆217Updated this week
- Identification of transposable element insertion polymorphisms (TIPs) based on a pan-genome and large-scale resequencing data☆18Mar 14, 2022Updated 4 years ago
- This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new trans…☆22Jun 23, 2026Updated last week
- ☆29Jul 16, 2022Updated 3 years ago
- ☆22Jan 13, 2026Updated 5 months ago
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.