Scaffolding with RNA-seq read alignment
☆21Jul 10, 2018Updated 7 years ago
Alternatives and similar repositories for Rascaf
Users that are interested in Rascaf are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 10 years ago
- use paired-end transcriptome reads to scaffold genomes☆11May 30, 2019Updated 6 years ago
- Scaffolding with assembly likelihood optimization☆21Dec 14, 2020Updated 5 years ago
- BESST - scaffolder for genomic assemblies☆58Jul 6, 2023Updated 2 years ago
- ☆26Oct 31, 2019Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- defusion☆14Aug 24, 2021Updated 4 years ago
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Dec 1, 2022Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆35Dec 11, 2019Updated 6 years ago
- A genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long…☆67Jul 23, 2020Updated 5 years ago
- TULIP - The Uncorrected Long read Itegration Pipeline☆27Jan 15, 2018Updated 8 years ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Oct 14, 2016Updated 9 years ago
- Understand your transcriptome assembly☆102Mar 22, 2024Updated 2 years ago
- Just Annotate My Genome☆19Sep 17, 2024Updated last year
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.☆45Nov 25, 2022Updated 3 years ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆45Feb 17, 2021Updated 5 years ago
- recompute GFA link overlaps☆25Sep 14, 2022Updated 3 years ago
- Error correction for Illumina RNA-seq reads☆68Jan 4, 2026Updated 3 months ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆30Dec 13, 2023Updated 2 years ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Apr 8, 2021Updated 5 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20May 31, 2020Updated 5 years ago
- A small program that glues together other programs allowing a user to input a codon alignment in FASTA format and produce an annotated ph…☆18Jan 14, 2015Updated 11 years ago
- Just Another JAva Package for Sequence Analysis☆24Dec 2, 2022Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Scaffolding genomes using synthetic long read clouds☆20Oct 11, 2016Updated 9 years ago
- Nanopore desc☆18Aug 22, 2016Updated 9 years ago
- ☆62Sep 15, 2025Updated 6 months ago
- parallelized blat with multi-threads support☆56Jan 23, 2025Updated last year
- Code to perform homolog detectability analyses as described in Weisman et al. 2020 (https://www.biorxiv.org/content/10.1101/2020.02.27.96…☆18Nov 18, 2024Updated last year
- SSPACE Basic, SSAKE-based Scaffolding of Pre-Assembled Contigs after Extension☆48Jan 17, 2021Updated 5 years ago
- TSEBRA: Transcript Selector for BRAKER☆49Updated this week
- Taxon-aware analysis of clustered protein sequences☆31Jul 1, 2024Updated last year
- finshingTool☆54Nov 22, 2016Updated 9 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Correction of palindromes in long reads from PacBio and Nanopore☆14Mar 1, 2022Updated 4 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆21Aug 15, 2018Updated 7 years ago
- Simple convertor from bam to FASTQ☆26Jun 30, 2015Updated 10 years ago
- Merge transcriptome assemblies☆31Oct 6, 2016Updated 9 years ago
- assembly evaluation tool☆35May 11, 2022Updated 3 years ago
- The MARVEL assembler☆80Jul 7, 2023Updated 2 years ago
- Chromosome-level scaffolding using multiple references☆165Sep 8, 2024Updated last year