adigenova / fast-sg
Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.
☆22Updated 6 years ago
Related projects ⓘ
Alternatives and complementary repositories for fast-sg
- Symmetric DUST for finding low-complexity regions in DNA sequences☆34Updated last year
- ☆28Updated last year
- Find Unique genomic Regions☆29Updated this week
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 2 years ago
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- ☆13Updated last year
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 4 years ago
- Population-wide Deletion Calling☆35Updated 2 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆45Updated 5 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 6 years ago
- Economic Genome Assembly from Low Coverage Illumina and Nanopore Data☆19Updated 2 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆15Updated 7 months ago
- Scaffolding with assembly likelihood optimization☆20Updated 3 years ago
- Lift-over alignments from variant-aware references☆34Updated last year
- Versatile simulator for structural variance and Nanopore/PacBio sequencing reads☆21Updated 11 months ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- ☆15Updated 4 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 5 years ago
- WGS (Wheat) Robust Assembly Pipeline☆22Updated 3 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- A comparative genome scaffolding tool☆17Updated 6 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- Hidden Markov Model based Copy number caller☆20Updated 3 weeks ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- ☆20Updated 2 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago