hitbc / LAMSALinks
Long Approximate Matches-based Split Aligner
☆13Updated 8 years ago
Alternatives and similar repositories for LAMSA
Users that are interested in LAMSA are comparing it to the libraries listed below
Sorting:
- ☆16Updated 3 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- Hidden Markov Model based Copy number caller☆20Updated 7 months ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Updated 2 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Updated 8 years ago
- Pan gGnome Viewer☆10Updated last year
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆13Updated 5 years ago
- ☆12Updated last month
- de Bruijn Graph-based read aligner☆33Updated 6 years ago
- De-novo Assembly Structural Variant Caller☆13Updated 8 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆12Updated 6 years ago
- Scalable and High Performance Variant Calling on Cluster Environments☆10Updated 3 years ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆10Updated 7 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 5 years ago
- recompute GFA link overlaps☆25Updated 2 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- A software for discovery, genotyping and characterization of structural variants☆22Updated 8 months ago
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Updated 7 years ago
- ☆15Updated 4 years ago
- ☆28Updated last month
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- Structural variation and indel detection using rolling local string graph assembly☆9Updated 8 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago
- Pacbio sequence alignment tool, please use "git clone" to copy and use the repository☆18Updated 6 years ago