hitbc / LAMSA
Long Approximate Matches-based Split Aligner
☆13Updated 8 years ago
Alternatives and similar repositories for LAMSA
Users that are interested in LAMSA are comparing it to the libraries listed below
Sorting:
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- Hidden Markov Model based Copy number caller☆20Updated 6 months ago
- Long read to reference genome mapping tool☆13Updated last year
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- ☆12Updated 3 weeks ago
- ☆16Updated 3 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- Pacbio sequence alignment tool, please use "git clone" to copy and use the repository☆18Updated 6 years ago
- de Bruijn Graph-based read aligner☆33Updated 6 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- ☆14Updated last year
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Updated 2 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- ☆28Updated last month
- recompute GFA link overlaps☆25Updated 2 years ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Updated 8 years ago
- ☆15Updated 4 years ago
- deSAMBA: fast and accurate classification of metagenomics long reads with sparse approximate matches☆10Updated last year
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆12Updated 6 years ago
- A efficient method to construct BWT index of a given DNA sequence, especially useful for gigantic and high similar genome.☆14Updated 9 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆10Updated 7 years ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Updated 5 months ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 3 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 5 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago