hitbc / LAMSA
Long Approximate Matches-based Split Aligner
☆13Updated 7 years ago
Alternatives and similar repositories for LAMSA:
Users that are interested in LAMSA are comparing it to the libraries listed below
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 9 months ago
- Pacbio sequence alignment tool, please use "git clone" to copy and use the repository☆18Updated 5 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 5 years ago
- ☆16Updated 3 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- Hidden Markov Model based Copy number caller☆20Updated 3 months ago
- de Bruijn Graph-based read aligner☆33Updated 6 years ago
- recompute GFA link overlaps☆25Updated 2 years ago
- ☆28Updated last year
- A efficient method to construct BWT index of a given DNA sequence, especially useful for gigantic and high similar genome.☆14Updated 8 years ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆10Updated 7 years ago
- Archived version 1.0.2☆16Updated 5 years ago
- Long read to reference genome mapping tool☆13Updated 10 months ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Updated 5 years ago
- Fast in-silico normalization algorithm for NGS data☆22Updated 3 years ago
- Scaffolding with assembly likelihood optimization☆20Updated 4 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- ☆13Updated last year
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- deSAMBA: fast and accurate classification of metagenomics long reads with sparse approximate matches☆10Updated 8 months ago
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Updated last year
- ☆17Updated 4 years ago
- Read nanopore sequence reads in real-time☆14Updated 7 years ago
- fastq quality assessment and filtering tool☆18Updated 2 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆13Updated 5 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆13Updated 5 years ago
- Structural variation and indel detection using rolling local string graph assembly☆9Updated 8 years ago