md5sam / Falcon2FastgLinks
Falcon2Fastg is a tool for converting a FALCON assembly to FASTG format to visualize with Bandage
☆13Updated 9 years ago
Alternatives and similar repositories for Falcon2Fastg
Users that are interested in Falcon2Fastg are comparing it to the libraries listed below
Sorting:
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated 4 months ago
- scripts to parse IrysView output☆11Updated 10 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆35Updated 6 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆25Updated 5 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 8 years ago
- Python wrapper for wavefront alignment using WFA2-lib☆38Updated last year
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Updated 8 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆21Updated 7 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 9 years ago
- ☆35Updated 5 years ago
- This repository is deprecated, please use the link to the right.☆23Updated 7 years ago
- compare sequences to a shared root reference sequence.☆24Updated 4 years ago
- ♥ Efficient Estimation of Evolutionary Distances☆47Updated 2 weeks ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 5 years ago
- Fast and accurate tool for estimating genomic distances between genome-skims☆47Updated 2 years ago
- Haplotype-aware genome assembly toolkit☆30Updated 6 years ago
- Tool for visualising assemblies.☆17Updated 10 years ago
- Population-wide Deletion Calling☆35Updated 9 months ago
- Colinear block visualisation tool☆31Updated 2 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 9 months ago
- Scaffolding with Ultralong Reads☆15Updated 5 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55Updated 3 years ago
- Alignment-based Scrubbing pipeline☆21Updated last year
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆45Updated 4 years ago
- An algorithm for centromere assembly using long error-prone reads☆25Updated 4 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆59Updated 4 months ago