Alternatives and similar repositories for Falcon2Fastg:

Users that are interested in Falcon2Fastg are comparing it to the libraries listed below

• institut-de-genomique / NaS
  NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…
  ☆15Updated 8 years ago
• kstatebioinfo / Irys-scaffolding
  scripts to parse IrysView output
  ☆11Updated 9 years ago
• svm-zhang / AGOUTI
  Annotated Genome Optimization Using Transcriptome Information
  ☆19Updated 4 years ago
• nickloman / nanopore-basecalling-scripts
  Some simple scripts to ease management and local basecalling of millions of FAST5 files
  ☆25Updated 7 years ago
• iqbal-lab-org / make_prg
  Code to create a PRG from a Multiple Sequence Alignment file
  ☆25Updated last year
• HongzheGuo / deBGA
  de Bruijn Graph-based read aligner
  ☆33Updated 6 years ago
• CSB5 / INC-Seq
  INC-Seq: Accurate single molecule reads using nanopore sequencing
  ☆14Updated 4 years ago
• kuleshov / architect
  Scaffolding genomes using synthetic long read clouds
  ☆20Updated 8 years ago
• brwnj / idplot
  compare sequences to a shared root reference sequence.
  ☆24Updated 3 years ago
• lbcb-sci / ra
  Assembler for raw de novo genome assembly of long uncorrected reads.
  ☆37Updated 5 years ago
• vibansal / hapcut
  program for haplotype phasing from sequence reads and related tools
  ☆25Updated 6 years ago
• benedictpaten / marginPhase
  ☆34Updated 5 years ago
• KorfLab / CEGMA_v2
  The final version 2 release of our software to detect core genes in eukaryotic genomes
  ☆28Updated 10 years ago
• mjsull / chromatiblock
  Colinear block visualisation tool
  ☆30Updated last year
• kakitone / MetaFinisherSC
  This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…
  ☆13Updated 9 years ago
• lexnederbragt / developments-in-next-generation-sequencing
  Developments in next generation sequencing: instruments, read lengths, throughput. See
  ☆27Updated 7 years ago
• compbiol / CAMSA
  CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
  ☆24Updated 5 years ago
• mpdunne / orthofiller
  OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.
  ☆22Updated 2 years ago
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 3 years ago
• alexiswl / poreduck
  A comprehensive toolkit for running Oxford Nanopore's MinION
  ☆12Updated 6 years ago
• walaj / svlib
  Toolkit for extracting SVs from long sequences and benchmarking variant callers
  ☆13Updated 8 years ago
• lh3 / htsbox
  My experimental tools on top of htslib. NOT OFFICIAL!!!
  ☆55Updated last year
• seryrzu / centroFlye
  An algorithm for centromere assembly using long error-prone reads
  ☆26Updated 3 years ago
• marbl / VALET
  A pipeline for detecting mis-assemblies in metagenomic assemblies.
  ☆14Updated 7 years ago
• uio-bmi / two_step_graph_mapper
  ☆21Updated 5 years ago
• lh3 / gffio
  ☆32Updated 2 years ago
• BilkentCompGen / hercules
  Profile HMM-based hybrid error correction algorithm for long reads
  ☆20Updated 6 years ago
• mkirsche / Grafter
  Scaffolding with Ultralong Reads
  ☆15Updated 4 years ago
• bede / kindel
  Indel-aware consensus for aligned BAM
  ☆21Updated 2 weeks ago
• benoukraflab / NanoVar---archived
  Archived version 1.0.2
  ☆16Updated 5 years ago