⛓ Long Interval Nucleotide K-mer Scaffolder
☆73Mar 27, 2026Updated last month
Alternatives and similar repositories for LINKS
Users that are interested in LINKS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling☆27Apr 1, 2026Updated last month
- 🌈Scaffold genome sequence assemblies using linked or long read sequencing data☆95Apr 1, 2026Updated last month
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆210Nov 18, 2022Updated 3 years ago
- Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.☆23May 29, 2018Updated 7 years ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Identifying repeats in high-throughput sequencing data☆16Apr 12, 2024Updated 2 years ago
- Error correction for Oxford Nanopore data☆47May 29, 2021Updated 4 years ago
- ✏️ Genome assembly polishing & SNV detection☆73Apr 1, 2026Updated last month
- Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.☆177Apr 22, 2026Updated 2 weeks ago
- ☆26Oct 31, 2019Updated 6 years ago
- Scaffolding genomes using synthetic long read clouds☆20Oct 11, 2016Updated 9 years ago
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 10 years ago
- reference-based long read assemblies of bacterial genomes☆52Aug 9, 2021Updated 4 years ago
- 🪡Correct and scaffold assemblies using long reads☆57Apr 1, 2026Updated last month
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Genome Pair Rapid Dotter☆68Sep 2, 2021Updated 4 years ago
- A fast approximate aligner for long DNA sequences☆287Oct 11, 2024Updated last year
- ⛓ Correct misassemblies using linked AND long reads☆63Mar 24, 2026Updated last month
- Chromosome-level scaffolding using multiple references☆166Sep 8, 2024Updated last year
- 🔗Genome assembly scaffolder using minimizer graphs☆85Apr 1, 2026Updated last month
- Eukaryotic Genome Annotation Pipeline☆385May 1, 2026Updated last week
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆45Jul 7, 2020Updated 5 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated last year
- De novo genome assembler.☆12Jul 30, 2018Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A fast whole-genome aligner based on de Bruijn graphs☆160Jul 6, 2025Updated 10 months ago
- An accurate and ultra-fast hybrid genome assembler☆87Apr 10, 2024Updated 2 years ago
- k-mer based assembly evaluation☆343Jun 28, 2024Updated last year
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Mar 17, 2016Updated 10 years ago
- Long read aligner☆114May 26, 2023Updated 2 years ago
- Pilon is an automated genome assembly improvement and variant detection tool☆380Apr 10, 2022Updated 4 years ago
- A genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long…☆67Jul 23, 2020Updated 5 years ago
- A fast tool for hybrid genome assembly of long and short reads☆78Apr 22, 2020Updated 6 years ago
- Integrated toolkit for analysis and evaluation of annotated genomes☆25Aug 1, 2025Updated 9 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- TULIP - The Uncorrected Long read Itegration Pipeline☆27Jan 15, 2018Updated 8 years ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆309Mar 18, 2024Updated 2 years ago
- The BTL C/C++ Common bloom filters for bioinformatics projects, as well as any APIs created for other programming languages.☆18Feb 26, 2022Updated 4 years ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆273Oct 13, 2022Updated 3 years ago
- haplotypic duplication identification tool☆284Oct 30, 2025Updated 6 months ago
- scripts to parse IrysView output☆11Jun 24, 2015Updated 10 years ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆564Feb 14, 2024Updated 2 years ago