The MARVEL assembler
☆80Jul 7, 2023Updated 2 years ago
Alternatives and similar repositories for MARVEL
Users that are interested in MARVEL are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool for recovering synteny blocks from multiple alignment☆33Oct 18, 2021Updated 4 years ago
- Making diploid assembly becomes common practice for genomic study☆30Oct 2, 2017Updated 8 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆189May 17, 2024Updated 2 years ago
- TULIP - The Uncorrected Long read Itegration Pipeline☆27Jan 15, 2018Updated 8 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆298May 9, 2024Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Ultra-fast de novo assembler using long noisy reads☆136Feb 24, 2021Updated 5 years ago
- ☆26Oct 31, 2019Updated 6 years ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Feb 28, 2017Updated 9 years ago
- A Hi-C scaffolding method☆22Dec 22, 2021Updated 4 years ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆273Oct 13, 2022Updated 3 years ago
- Evaluate variant calls and its combination with k-mer multiplicity☆69Dec 2, 2022Updated 3 years ago
- A fuzzy Bruijn graph approach to long noisy reads assembly☆39Mar 15, 2017Updated 9 years ago
- Generate an interactive dot plot from mummer or minimap alignments☆219Jan 17, 2024Updated 2 years ago
- Chromosome-level scaffolding using multiple references☆169Sep 8, 2024Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Scaffolding with RNA-seq read alignment☆21Jul 10, 2018Updated 7 years ago
- FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds☆72Nov 12, 2020Updated 5 years ago
- Correction of palindromes in long reads from PacBio and Nanopore☆14Mar 1, 2022Updated 4 years ago
- Simple tools for working with Hi-C data☆20Dec 19, 2018Updated 7 years ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- ⛓ Correct misassemblies using linked AND long reads☆64Mar 24, 2026Updated 3 months ago
- Gfapy: a flexible and extensible software library for handling sequence graphs in Python☆71Nov 13, 2025Updated 7 months ago
- FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON…☆205Mar 4, 2022Updated 4 years ago
- ☆28Apr 21, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Filter of Pairwise Alignement☆44Jan 31, 2022Updated 4 years ago
- Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution"☆64Oct 15, 2020Updated 5 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Mar 3, 2020Updated 6 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Downstream Analysis☆20Updated this week
- Taxon-aware analysis of clustered protein sequences☆31Jul 1, 2024Updated 2 years ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆212Nov 18, 2022Updated 3 years ago
- ☆32Jan 3, 2025Updated last year
- TGS scaffolding☆47Nov 19, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- MECAT: an ultra-fast mapping, error correction and de novo assembly tool for single-molecule sequencing reads☆111Oct 2, 2020Updated 5 years ago
- Large genome reassembly based on Hi-C data, continuation of GRAAL☆44Apr 27, 2026Updated 2 months ago
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Mar 17, 2016Updated 10 years ago
- A fast approximate aligner for long DNA sequences☆287Oct 11, 2024Updated last year
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆26Oct 24, 2025Updated 8 months ago
- scripts to parse IrysView output☆11Jun 24, 2015Updated 11 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Oct 5, 2021Updated 4 years ago